Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_34940 |
Symbol | mnmC |
ID | 7762389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | + |
Start bp | 3564404 |
End bp | 3566365 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643806360 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_002800618 |
Protein GI | 226945545 |
COG category | [S] Function unknown |
COG ID | [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACC ATCCCCACGC CCAGCTCGAC TGGGACGAGC AAGGCCAGCC GCTGTCGCGC GGTTTCGGCG ACGTGTATTT CTCCCGTGCC TCGGGGCTGG AGGAGACCCG CTACGTGTTC CTCGGCCACA ACGGACTGCC GCTGCGCTTC GCCGCTCTGC CGGCCGGCGG GCGGTTGAGC ATCGGCGAAA CCGGCTTCGG CACCGGGCTG AACTTCCTCT GCGCCTGGCA ACTGTTCGAG CGCACGGCCC CGGCCGACGC CCGCTTGCAC TTCGTCAGCG TCGAGAAATA CCCCCTGACC CGCGCCGACC TGCAGCGGGC CCTGGCCCTC TGGCCGGAGC TGGCGCCTTG GGCCGAGGCC CTGCTGGAGC AGTACGTCGC CGTACACCCG GGCTTCCAGC GCCTGGTCTT CGCCGGCGGC CGGGTGGTGC TGACCCTGCT GGTCGGCGAC GTGCTGGAGC GTCTGCCGGA ACTGGACGCG CGCATCGACG CTTGGTTCCT CGACGGCTTC GCGCCGGCGA AGAACCCGCA GATGTGGACG CCCGAACTGT TCGCCGAACT GGCCCGGCTG TCCGCTCCCG GCGCCAGCCT GGCCACCTTC ACCAGCGCCG GCCTGGTGCG CCGCGGGCTG CTCGGAGCGG GCTTCGCCAT GCAGCGGGTC AAGGGGTTCG GCCAGAAGCG CGAGATGCTC GCCGGACGTT TCGAAGGAGC CGTGCCGGAT GCCGCCAAAC CCTGGTTCGC CCGCCCGCCG CGTCCCGCCG GCACCCGCGA GGCGCTGGTG ATCGGCGCCG GCCTGGCCGG CTGCGCCGCG GCGGCGAGCC TCGCCCGGCG CGGCTGGCGG GTGACCCTGC TGGAGCGCCG CGACGGGGTC GCCGAGGAAA CCTCGGGCAA CCCGCAGGGC GTGCTCTACC TCAAGCTGTC GGCCCACGGC ACGGCGCTCT CGCGACTGAT CGTCGCCGGC TTCGGCTTCA CCCGCCGGCT GCTGCAGCGC CTCGAAGCGG GTCATGACTG GTCTCCCTGC GGCGTGCTGC AACTGGCCTT CGACGCCAGG GAAGCGGCGC GCCAGGCCGA ACTGGCGGCG GCCTTCCCCG GCGACCTGCT GCACAACCTG AGCCGCGCGC AAGCCGAGGC CCTGGCCGGG GTCGCCCTGG ACAGCGGCGG GCTGTTCTAC CCCGAGGCCG GCTGGGTGCA TCCGCCGGCG CTCTGCGCAC AGCTCGCCGA CCATCCGAAC ATCCGCCTGC TGAGCCACCG GGAAGTCCTG GAGTTGCGCC GCGAGAACGG CCAATGGTGC GCCCGGAGCG GCGACCGATC GCTTGCCCGG GCGCCGGTCG CGGTGCTCTG CGGCGCGGCG GACATCGCCC GCTTCCCCGA GACCGCCGGA CTGCCGCTCA AGCGCATCCG CGGGCAGATC AGCCGCCTGC CGGCGACCGC CGCCAGCAGC CACCTGAAGA CCGTGCTCTG CGCCGAGGGC TACGTCGCCC CGCCGCGCGA CGGCGAACAC ACCTTGGGCG CCAGCTTCCG TTTCGAGGCC AGCGAACTGG CGCTGACCGT CGAGGAACAT GCGGAGAACC TGCAACTGTT GCGGGAGATC TCCGCCGACC TAGCCGGGCG GCTGCAACTC GAGCGCCTCG ATCCGGCGGC TCTCGACGGA CGCGCGGGCT TTCGCTGCAC CAGCCCGGAC TACCTGCCGA TCGTCGGCCC CCTGGCCGAC GCCGCAGCCT TCGCCGAAGC CTACGCCGTG CTCGGCAAGG ACGCCCGGCA GGTGCCGCAG CGTCCCTGTC CCTGGCTGGA AGGCCTGTAC GTCAGCAGCG GCCACGGCTC GCGCGGCCTG CTCAGCGCAC CGCTGGCCGG GGAACTGCTG GCCGCCTGGC TGGACGACGA GCCGCTGCCG GTGCCGAGGG CGGTGGCGGA GGCCTGCCAT CCCAACCGGT TCGGGTTGCG GAGGTTGATC CGGGGGAAGT GA
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Protein sequence | MTDHPHAQLD WDEQGQPLSR GFGDVYFSRA SGLEETRYVF LGHNGLPLRF AALPAGGRLS IGETGFGTGL NFLCAWQLFE RTAPADARLH FVSVEKYPLT RADLQRALAL WPELAPWAEA LLEQYVAVHP GFQRLVFAGG RVVLTLLVGD VLERLPELDA RIDAWFLDGF APAKNPQMWT PELFAELARL SAPGASLATF TSAGLVRRGL LGAGFAMQRV KGFGQKREML AGRFEGAVPD AAKPWFARPP RPAGTREALV IGAGLAGCAA AASLARRGWR VTLLERRDGV AEETSGNPQG VLYLKLSAHG TALSRLIVAG FGFTRRLLQR LEAGHDWSPC GVLQLAFDAR EAARQAELAA AFPGDLLHNL SRAQAEALAG VALDSGGLFY PEAGWVHPPA LCAQLADHPN IRLLSHREVL ELRRENGQWC ARSGDRSLAR APVAVLCGAA DIARFPETAG LPLKRIRGQI SRLPATAASS HLKTVLCAEG YVAPPRDGEH TLGASFRFEA SELALTVEEH AENLQLLREI SADLAGRLQL ERLDPAALDG RAGFRCTSPD YLPIVGPLAD AAAFAEAYAV LGKDARQVPQ RPCPWLEGLY VSSGHGSRGL LSAPLAGELL AAWLDDEPLP VPRAVAEACH PNRFGLRRLI RGK
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