Gene Avin_31410 details

Gene Information

• Locus tag: Avin_31410
• ID: 7762040
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 3247329
• End bp: 3249332
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 643806015
• Product: sigma54-dependent activator protein
• Protein accession: YP_002800279
• Protein GI: 226945206
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGGTCA CACGACTAGA AACGGCCTGC CCCCGGGAAG ACCTCGACTA CATCGCCTCC 
ATCGGTTCGG TTGATCTGAG CGAGGGGCCT GTTCCCGAGG TCGAGCAGGC CTGGCGGGCC 
TGCCTGGACG GGCGGCACGA GCGGCCGGCC GGGGTCAGGC CGGTCATCTG GGACTCCTGG 
CGGCGCTGCG TGCGGGCCGG GCTCGAGCCC GACGGCTTCG AGTACCGTTT CGTCGACGCC 
GCCGTATTGG CCGAGAAGCT GAAAAGCAAC CGCCTGCTGA TCGAGACCGC CGCGGAAGTC 
ATGCAGGGGC TGCTCGCTTA CAACCCCAGG GGACACATAA ACCTGACCGA CGCCGAGGGC 
GTCACGCTGC ACTTCTGCGG TCTGGACATC ACCCCGGTGG GCAGCGTGCT CCTGGAATCG 
CTGCAGGGAA CCAACTGCAC CGGGCTGGCC ATCGCGGAAA ACCGCCTGGT GTACGTGCTG 
TCGGAGGAGA ATTTCGGGAC CTGGCTGCGC CAGCGCCGCA TGCACTGCGC CGCCGCGCCG 
ATCCGCGATC TCGGCGGACG CACCCTGGCG ATCCTGACCC TCACGGCGGA ACCCGGCCGG 
TTCCACTTTC ACACCCTGGG GACCGTCCAG GCGGCGGCCG AGGCGGTTTC CCGGCAGATG 
GCCCTGCAAG CTTTGCTGGA AGAGCAGCGG ACGCTGCTCG AAGTGCTCAA CGAAGGTCTC 
GTCGTGCTCG ACGAGCGGGG CTGCATCAAG GCCCTCAACC GCTATGCCCG GCAACTGTTC 
CGGGTGGAGC GCGACCTGCT CGGCGCGCCG TTCCACCGCC TGGGCCGCGG CGAACGGGTG 
GACAGCCTGC TGCTGCGGGC GGACGAGGGC CTGCACGACC TGGACATCAC CCTCCAGCTC 
CATGACGGCA CGCACCTGTC ATGCCTGGCT TCCGTCTGCC CCACGGAGCG GGGCGGGCGG 
ATCGTCTCCC TGCGGGAAAA CCGGCGCATC CGCGAAATCA CCCGGCGCAT CATCGGCACC 
CAGGCCAGCT ACACCTTCGA GACCATCCTG GGCGGCTCGC GGGCCATGCA GGACACCCTG 
CGGCTGGCGC GGATCGCCAG CCGGGGCGAC TCGACCACCC TGATCCTGGG AGAAAGCGGC 
ACCGGCAAGG AGCTGTTCGC CCAGGCCATC CACAACGCCA GCGAGCGTTG CGGCGGCCCC 
TTCGTGGCGG TCAACTGCGG GGCCATCCCG CGCGACCTGG TGCAGAGCGA ACTGTTCGGC 
TACATCGAGG GCGCCTTCAC CGGCTCGGCG CGAGGCGGTT CGGCCGGGAA GTTCGAGCTG 
GCCGACGGCG GCACCATCTT CCTGGACGAG ATCGGCGACA TGCCCTTCGA CGCCCAGGCC 
AGCCTGCTGC GGGTCTTGCA GGAGGGCGAG GTCACCCGGG TCGGGGCGAA GCGCTCGCAG 
CCGGTGGATG TGCGCATCGT CGCGGCGACC AACCGCAACC TGAGCCGGGC CGTCGCCGAC 
GGCAGCTTCC GGGAGGACCT CTATTACCGG CTCAACGTGC TCAGCCTCAG CGTCCCGCCG 
CTGCGGATGC GCCGGGAGGA TATTCCGACC CTGGCGCAGC ACTTCCTCGA ACGCTGCGCC 
CGGTCGCTGC GCAAGCCCGT GCGGGGCATC GTCCGGGAGG CGCTGGACAT CCTCATGGCC 
CATGCCTGGC CGGGCAATGT CCGCGAACTG GAAAACACCA TCGAGCGGGC CGCCAACCTG 
GCCGGCGGCG AACTGATCGA GGCGGAGGAC CTGCCCCTCG AACTTGCCCA GGTCGCACGC 
CGGGCGGCGG AGCCGGCGGT GCGCTGCGGG GCGGCCATGG ACCTGGGCAG CCATGAAATG 
AACGCCATAG CCGCGGCCCT GCGGGAGTGC CGGGGCAACG TTCGCCTGGC CGCGAAGCGG 
CTCGGCGTCT CGCGGGGCGG GCTGTACAAC AAGATGAACC GTTACGGCCT GAGCGCCGAC 
GCCTTCCGCT CGGGACGGGG CTGA 

 

Protein sequence

MPVTRLETAC PREDLDYIAS IGSVDLSEGP VPEVEQAWRA CLDGRHERPA GVRPVIWDSW 
RRCVRAGLEP DGFEYRFVDA AVLAEKLKSN RLLIETAAEV MQGLLAYNPR GHINLTDAEG 
VTLHFCGLDI TPVGSVLLES LQGTNCTGLA IAENRLVYVL SEENFGTWLR QRRMHCAAAP 
IRDLGGRTLA ILTLTAEPGR FHFHTLGTVQ AAAEAVSRQM ALQALLEEQR TLLEVLNEGL 
VVLDERGCIK ALNRYARQLF RVERDLLGAP FHRLGRGERV DSLLLRADEG LHDLDITLQL 
HDGTHLSCLA SVCPTERGGR IVSLRENRRI REITRRIIGT QASYTFETIL GGSRAMQDTL 
RLARIASRGD STTLILGESG TGKELFAQAI HNASERCGGP FVAVNCGAIP RDLVQSELFG 
YIEGAFTGSA RGGSAGKFEL ADGGTIFLDE IGDMPFDAQA SLLRVLQEGE VTRVGAKRSQ 
PVDVRIVAAT NRNLSRAVAD GSFREDLYYR LNVLSLSVPP LRMRREDIPT LAQHFLERCA 
RSLRKPVRGI VREALDILMA HAWPGNVREL ENTIERAANL AGGELIEAED LPLELAQVAR 
RAAEPAVRCG AAMDLGSHEM NAIAAALREC RGNVRLAAKR LGVSRGGLYN KMNRYGLSAD 
AFRSGRG