| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_24520 |
|---|
| Symbol | kdpD |
|---|
| ID | 7761366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 2448146 |
|---|
| End bp | 2450770 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643805335 |
|---|
| Product | osmosensory K+channel histidine protein kinase, KdpD |
|---|
| Protein accession | YP_002799612 |
|---|
| Protein GI | 226944539 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.889371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATG CCATGAACGA AGCCCGCGAT GTTCCCGAGC GGACGGCCGC GCAATCCAGC
CACGGCGAAG GGGGCGGCCG GCTCAGGCGC GGCCGGCTGA GGATCTATCT CGGCGCGGCG
CCCGGGGTGG GCAAGACCCT GGCCATGCTC CAGGCCGCCA CGGAGCTGCT GCGCCAGGGC
GTCGATCTGC GGGTCGGCAG CCTCGACTGC GCCGACGATG CCGCCCGCGG CGAGCTGCGG
ATGCGGCTCG CCGCGCTGCC GGGCGGCCGG GAGGCGGCCG GCGAACTGGA CCTCGATGCG
CTGCTGGCCC GTCCGCCGGC CCTGCTGCTG GTCGACCGCC TGGCGCGCGC CAATCCGCCC
GGCAGCCGCC ATGCCCAGCG CTGGCAGGAT GTGCAGGAAC TGCTGGCCGC CGGTATCGAT
GTCCACGCCA CCCTCGACGT GTCGCACCTG GAAAGCCTGA AGAACCGGGT CGAAGCCCTG
ACCGGCCAGC CGGTGACGGA AACGTTGCCC GACTGGCTGC TGGAGGAGGC TCACGAGGTG
CTGCTGATCG ACTGCCTGCC GGGCGAGCTG CGCGACTTCG CGCCGACCAC CCTGGCCGCG
CTGCGCGCCC TGGCCCTGCA GGTGGTGGCC GGGCGCGCCG ACAGCGAGGT GCAGCGCCGC
TACCGGCCTT CCGGGCGCGA GGCGCCGGCC GTGCTCGGTC GCCTACTGGT GGCGGTGGAC
GGCGACGAGC AGTCCGAACA GTTGGTGCGC CATGCCAGCC AGGTGGCGCG CCGACGCCAG
TTGCCCTGGA CGCTGGTCCA CGTGGACGAC GGCCGCGCGC GCGGCGAGGA GTCCCGCCGC
CTGCTGCAGG CGGCCCAGCG GCTGGCCGAG CGCCTGGGCG GCGAAGTGGT CGGCCTGCTC
GGCGATGAGG TCGCCGATAC CCTGCTACGC CACGCCCGCG AGCGCCGCGC CAGCGTGTTG
CTGGTCGGTG GCCACCGCCG CCGCTGGTTC GGCAGGGGCG TGGTCGAGCG CCTGCTACGC
CGGGCGCGTG GCCTGGAGAT CGGCGTGCTG GCCGCCGAAG AGGCGGTTTC CGTGCCGTCT
TTCGCCGTGC GCGGCTTCGT CGCCGGTCCG CTCGACTATG CTCTGGCGCT GCTCGCCACG
CTGCTGGCCA GCGCCGTGGC CTGGGGCTTC TCGCGGATGC TGGCGCTACA GAACATTTCC
CTGGTGTTTC TCGCCGCTGT CCTGCTGGTC GCCGTGCGCA GCGGCTTCGG CCCCGCGCTG
TGCTGCGCGC TGCTGTCCTT CTTCGCCTAC GACCTGCTGT TCATCGCACC GACCTTTTCG
CTGATCGTGG CGCATCGGGT GGATGTACTG GGCCTGTTGT TCTTCCTGCT CATGGCCGCG
CTGACCGGCA ACCTGGCGAC CCGCCAGCGC CGGCAGATGC AGGCGCTGCG CGAGACCCAG
GCGGAAACCG CGGCATTGCT CGATCTGACC CGCAAGCTGA GCGCCGCCAC CGACCGGCGC
GCGGTGCTGG CCGCCGCCGT GGAGCAGTTC GCCGCCTGGC GCGATCTCGA CGTCCGCCTG
CTCGGCCCCG ATGGCGCCGG TGCTCTGCGG GTCGAGGCGG GCGTCGCCGG CGATCTCGGC
AAAAGCGAGC GGGCCGCCGC CGAATGGGTC TGGCAGCACG AACTGCCGGC CGGCCTCGGT
ACCGACACCC TGCCCGACGG CCGCTGGTGG TGGTGGCCGC TGTCCGGCGA GCGCGGCCCC
CTGGCCCTGC TCGGCATCGC CCCGCGGGAC GGCCGGCCGC TGCCGGCGTC CCGCCGCCAC
CGGCTGGTCG CCCTCTGTCA GCCGCTGGCC CAGGCCCTGG CGCGCGCGCA ACTGGCCGAG
GAACTGCAGG CCGCCCGGCT GCGCGGGGAG ACCGAGCAGT TGCGCAGCGC CCTGCTGGCT
TCGGTGTCCC ACGACCTGCG CACGCCGCTC ACCGTCATGC ACGGCGCCAT CGACAGCCTG
CTGACCCTGG ACGGGCAGAT CGCCGCCGCC GACCGCCGCG AACTGCTGGA AAGTACCCGC
GACGAGGCCG AGCGGCTCGA CCGCTACATC CAGAACCTGC TGGACATGAC CCGCCTCGGC
CACGGCGGTC TCAAGCTGGA GCGCGACTGG GTGGCGCCGG CGGACATCGT CGCCAGCTCC
CTGCAGCGCC TGCGCCCGGT GCTGGCGTCC TTCCGTCTGG AGACGCGCAT CGCCGGGGAA
CTGCCGCTGC TGCATGTGCA CGCGGCGCTG ATCGAACAGG CGCTGGTCAA CGTCCTGGAA
AACGCCGCGC GCTTCTCGCC GCCCGGTGGC CGGCTGCGGG TGGCGGTCGA CAGCGACGGC
GGCGAACTGC GCCTGTCGGT GAGCGACCAG GGACCCGGCA TCCCGCCGGC GGAACGGGAA
AAGATCTTCG ACATGTTCTA CACCGCGGCC CGTGGCGACC GCGGCGGCCC CGGCACCGGC
CTGGGCCTGG CGATCTGCCA GGGCATTCTC GGCGCCCACG GCGGGCGGGT GACGGTGGGC
GAGGGGCTGG ACGGGCAGGG CGCCACCCTG ACCCTGCACC TGCCGTTGCA GCCGCAGCCG
CCGGGCGAGA GCGAGCGCGA CGACGAGGCG CCGGTCCTGC CATGA
|
|---|
| Protein sequence | MTHAMNEARD VPERTAAQSS HGEGGGRLRR GRLRIYLGAA PGVGKTLAML QAATELLRQG
VDLRVGSLDC ADDAARGELR MRLAALPGGR EAAGELDLDA LLARPPALLL VDRLARANPP
GSRHAQRWQD VQELLAAGID VHATLDVSHL ESLKNRVEAL TGQPVTETLP DWLLEEAHEV
LLIDCLPGEL RDFAPTTLAA LRALALQVVA GRADSEVQRR YRPSGREAPA VLGRLLVAVD
GDEQSEQLVR HASQVARRRQ LPWTLVHVDD GRARGEESRR LLQAAQRLAE RLGGEVVGLL
GDEVADTLLR HARERRASVL LVGGHRRRWF GRGVVERLLR RARGLEIGVL AAEEAVSVPS
FAVRGFVAGP LDYALALLAT LLASAVAWGF SRMLALQNIS LVFLAAVLLV AVRSGFGPAL
CCALLSFFAY DLLFIAPTFS LIVAHRVDVL GLLFFLLMAA LTGNLATRQR RQMQALRETQ
AETAALLDLT RKLSAATDRR AVLAAAVEQF AAWRDLDVRL LGPDGAGALR VEAGVAGDLG
KSERAAAEWV WQHELPAGLG TDTLPDGRWW WWPLSGERGP LALLGIAPRD GRPLPASRRH
RLVALCQPLA QALARAQLAE ELQAARLRGE TEQLRSALLA SVSHDLRTPL TVMHGAIDSL
LTLDGQIAAA DRRELLESTR DEAERLDRYI QNLLDMTRLG HGGLKLERDW VAPADIVASS
LQRLRPVLAS FRLETRIAGE LPLLHVHAAL IEQALVNVLE NAARFSPPGG RLRVAVDSDG
GELRLSVSDQ GPGIPPAERE KIFDMFYTAA RGDRGGPGTG LGLAICQGIL GAHGGRVTVG
EGLDGQGATL TLHLPLQPQP PGESERDDEA PVLP
|
|---|
| |