| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_24250 |
|---|
| Symbol | fliD |
|---|
| ID | 7761340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 2420185 |
|---|
| End bp | 2421522 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643805310 |
|---|
| Product | Flagellar hook-associated protein |
|---|
| Protein accession | YP_002799587 |
|---|
| Protein GI | 226944514 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1345] Flagellar capping protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0939712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACCA TCTCGTCACT GGGCGTCGGC TCGGGACTCG ACCTCACCGG GCTGCTCGAT
CAGCTCGAAT CCGCCGAGCG CCAGAAACTC ACCGTCATCA CCAACCAGCA AAGCGTCATT
TCCAGCAAGA TTTCCGCTTT CGGCAGCCTG CAGAGCGTCC TGACCAGCCT GCAGGGCACG
GTCGAGACGC TGGCCACGGC CTCCACCTAC CAGGGCCAGA CCAGCAGCAT CAGCGGCAGC
GGCGTGGCCG TGGCGGTGAC CGCCGATGCC GTGCCGGGCA GCTACCAGGT GCAGGTGAGC
CAGCTCGCCC AGGCGCACAG CCTGGCCAGC AGCGGTGTGG CCGACAAGAC CGCCGCCGCG
GCGACCGGCA CCCTGACCAT CCAGAGCGGC GACGAGACCC TGGAGATCGA ACTGAGCGAG
GGCAGCAATT CCCTGGAGGA CATCCGCGAC GCCATCAATG CCGGGGATGG CGGCGTCACC
GCCTCGCTGG TCAACGACGG CAGCGGCACG CCCTGGCGCC TGGTGCTGAC CGCCAAGGCC
ACCGGCACCG AGGCGGAGAT CTCGGTCGGC GGTTCCGCGG CCGCCGCGCT GGGCTTCACC
ACGACCACGG AGGCCAAGGA TGCCCAACTG ACCGTCAACG GCATCGCCAT CACCAGCCAG
GGCAATACCG TCGAGGGCGC CCTGCAGGGG GTGACCCTGA CCCTTTCCGC CACCGGCGAC
GCGCAGACCC TGACCGTCAA GCGCGACACC GGCTCGATCA AGACGGCCAT CAACAGCTTC
GTCAGCGCCT ATAACGCCCT GGACAGCGTC GCCGACAGCC TCACCTCCTA CGATTCCGAC
AGCGGCGACG CCGGTGTCCT GCTCGGCGAC TCGACCCTGC GCGGCGTGCA GAGCAAGTTG
CGCCAGGCGA TCACCGGCGG ACTCGACGAG GGCACCTATC GCTACCTGTC GGACCTGGGG
ATCTCGCTGC AGCTCGACGG TACCCTGAAG GTCGACGACA GCAAGCTGAG CGAGGCGCTC
GAAGGCGACC TGACGGATAT CCAGGCGCTG TTCGTCGGTA CCGACGAACA GCCGGGGCTG
GCCGCCGGGC TGGGCGATTC GCTGGACGCC ATTCTCGACG AGGACGGCGC GCTCAGCTCG
GCCATCGAGG GCCTGGAGTC GCGCAACGAG GCGCTCGGCG AGCGCTACAC GCGCATGGAA
AGCAGCATCG AGACGCTCAT GGCGCGCTAT ACCGAGCAGT TCTCGGCGCT CGATACGCTG
ATCGCCCAGA TGAACTCGAC CAGCAGCTAT CTGACCCAGC AGTTCGACGC CCTGAACGCC
ATGCTGAGCG ATTCATAG
|
|---|
| Protein sequence | MATISSLGVG SGLDLTGLLD QLESAERQKL TVITNQQSVI SSKISAFGSL QSVLTSLQGT
VETLATASTY QGQTSSISGS GVAVAVTADA VPGSYQVQVS QLAQAHSLAS SGVADKTAAA
ATGTLTIQSG DETLEIELSE GSNSLEDIRD AINAGDGGVT ASLVNDGSGT PWRLVLTAKA
TGTEAEISVG GSAAAALGFT TTTEAKDAQL TVNGIAITSQ GNTVEGALQG VTLTLSATGD
AQTLTVKRDT GSIKTAINSF VSAYNALDSV ADSLTSYDSD SGDAGVLLGD STLRGVQSKL
RQAITGGLDE GTYRYLSDLG ISLQLDGTLK VDDSKLSEAL EGDLTDIQAL FVGTDEQPGL
AAGLGDSLDA ILDEDGALSS AIEGLESRNE ALGERYTRME SSIETLMARY TEQFSALDTL
IAQMNSTSSY LTQQFDALNA MLSDS
|
|---|
| |