| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_20770 |
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| Symbol | |
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| ID | 7761002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | - |
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| Start bp | 2068901 |
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| End bp | 2070034 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643804972 |
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| Product | Squalene/phytoene synthase |
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| Protein accession | YP_002799253 |
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| Protein GI | 226944180 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR01559] farnesyl-diphosphate farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00645323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAT CCCAAACAGC TCTAGCTATC GAGTCCTCAA CAACCAGTGC CGATGCTTAT
CAAAACGCTA TCCTTTCAAA AGTCTCCAGA ACTTTCGCAC TGACCATTCC CCAATTGCCG
CCGCTATTAC GCCGTGCGGT GACCAATGCT TATCTGTTGT GTCGCATCGC AGATACCATC
GAGGATGAAC CGGCGTTTTC CGCCGAGGAA AAGCGTCGTT ACGAGGATGC ATTCATCGAT
GCGGTGACTG GCCGCATCGC ACCGCAATAT TTCTCGACCG AACTGGCGTC ACGATTCTCC
ACGGAAACCT CGGAAGCCGA GCGTGACCTG GTGAGCCAAT TGCCGTTGGT GTTACAGGTT
ACCAATAGCT TGAAGCCGGC ACAGCGCATG GCGATCGTCA ATTGCCTGAA AGTGATGTCC
CACGGCATGC ACGACTTCCA GCGCAACGTA GGCCAGCATG GACTGGAAAC GCTGTGCGAC
ATGGATTGCT ACTGCTACTG CGTAGCCGGC GTAGTGGGCG AAATGCTGAC GGAACTGCTC
ATCGATTTCG ATCCCGCCCT GGCCAGCCAG CGTGACCCTC TGATGCGTCT GGCGATCTCT
TTCGGCCAAG GGCTGCAGAT GACCAACATC CTCAAGGATC AGTGGGAAGA TTACCGCCGT
GGCGTCTGCT GGCTGCCGCA GGACGTCTTC GCCCGATATG GCGTGCGATT GGAGGAGTTG
CAAGCGGGCC GGCAGGATGC GAACTATATG AGCGCACTGA CCGAGCTCAT CGGGGTGGCT
CACGCCCACC TGCGCGACGC GTTGGAATAT ACGCTGATGA TTCCGAACAG ACACTCCGGG
TTCCGCCGCT TCTGCTTGTG GAGTATCGGC CTCGCCGTGC TGACACTGCG CAAGCTGCAG
CAAAACCCCC ATTTCTCCGC CGGCGAGCAA GTGAAGGTAT CGCGCAAGGC GGTAGCCTAC
ACCATCGCGC TCACGCGACT GACAGGCAAT TACAATACCG GTTTGCGCTG GCTGTTCGCA
GCATCCGCAC GCAAGCTTCC GTTGACGCCG CTGTCCGCGG AATGGAGCAC CTCTCCCCAC
CCACACCTTG CCTGGCCGAA GAGCGCCATC TCCTACTTCG CCGAATCGGC CTAG
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| Protein sequence | MLESQTALAI ESSTTSADAY QNAILSKVSR TFALTIPQLP PLLRRAVTNA YLLCRIADTI
EDEPAFSAEE KRRYEDAFID AVTGRIAPQY FSTELASRFS TETSEAERDL VSQLPLVLQV
TNSLKPAQRM AIVNCLKVMS HGMHDFQRNV GQHGLETLCD MDCYCYCVAG VVGEMLTELL
IDFDPALASQ RDPLMRLAIS FGQGLQMTNI LKDQWEDYRR GVCWLPQDVF ARYGVRLEEL
QAGRQDANYM SALTELIGVA HAHLRDALEY TLMIPNRHSG FRRFCLWSIG LAVLTLRKLQ
QNPHFSAGEQ VKVSRKAVAY TIALTRLTGN YNTGLRWLFA ASARKLPLTP LSAEWSTSPH
PHLAWPKSAI SYFAESA
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