| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_20160 |
|---|
| Symbol | |
|---|
| ID | 7760944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 2006139 |
|---|
| End bp | 2007044 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643804913 |
|---|
| Product | RNA pseudouridine synthase family protein |
|---|
| Protein accession | YP_002799196 |
|---|
| Protein GI | 226944123 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATG CTTCCGCCGC CAGCCTCCGC CCCAGCGTCC TGCACCTGCC GCGCGGCGAC
TGGCGCACTG TACTCGATTG CCTCTGCGCG CATTTCCCGG CGATCGGCCG GGAAATCTGG
CTGGAGCGCA TGCGCCGTGG CCGGGTGCTG GACGGCGAGG GGAACGTCCT GGGGCCCGAG
TATCCCTACC GTGAGGCGTT GCGCGTCCAC TACTTTCGCG AGGTGGCGGC GGAAACGCCG
ATTCCCTTCG CCGAAGCGGT GCTGCACGCG GACGACCATC TGGTGGTGGC GGACAAGCCG
CATTTCCTGC CGGTCGCCCC GGTCGGCGAG TACGTCGAGC AGACCCTGCT GGCGCGCCTG
GTGCGCCGCC TCGGCAATCC CGACCTGGTG CCGTTGCACC GCATCGACCG GCTCACCGCC
GGGCTGGTGC TGTTCTCCTG CAACCCGGCG AGTCGCGGGC GCTATCAGGC GCTGTTCCGC
GAACGGCGAA TCCGCAAGGT CTACGCGGCC ATCGCCCCGG CGCTGCCGGG GCTGAGCTTC
CCGCTGCTGC GCCGGAGCCG GCTGGTCAAG GGCGAGCCCT TCTTCCTGAT GCGCGAGGCC
GAGGGCGAGC CGAACAGCGA GACCCGCGTC GAACCGGGCG AGCGCCGGGG GGAGCTGTGG
CGTTACGTGC TGCATCCGGT CACCGGCAAG ACCCACCAGT TGCGCGTGCA CATGGCCACG
CTGGGCGCGG GGATCTGCAA CGATCCGCTC TATCCGCGCC TGCTGGAGCG TTCCCGGCGG
GAGATCGACG ATTATCGCCG GCCGCTGCAG TTGCTGGCGC AGACCCTGAA CTTCGTCGAT
CCGCTGAGCG GGCGGGAGCG GCGCTTCGAC AGCCGCCTCG CGCTGGATTT CGATGCCTGC
CGCTGA
|
|---|
| Protein sequence | MSDASAASLR PSVLHLPRGD WRTVLDCLCA HFPAIGREIW LERMRRGRVL DGEGNVLGPE
YPYREALRVH YFREVAAETP IPFAEAVLHA DDHLVVADKP HFLPVAPVGE YVEQTLLARL
VRRLGNPDLV PLHRIDRLTA GLVLFSCNPA SRGRYQALFR ERRIRKVYAA IAPALPGLSF
PLLRRSRLVK GEPFFLMREA EGEPNSETRV EPGERRGELW RYVLHPVTGK THQLRVHMAT
LGAGICNDPL YPRLLERSRR EIDDYRRPLQ LLAQTLNFVD PLSGRERRFD SRLALDFDAC
R
|
|---|
| |