Gene Avin_15910 details

Gene Information

• Locus tag: Avin_15910
• Symbol: rfaH
• ID: 7760526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 1567059
• End bp: 1567520
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643804491
• Product: transcriptional activator RfaH
• Protein accession: YP_002798781
• Protein GI: 226943708
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator
• TIGRFAM ID: [TIGR01955] transcriptional activator RfaH

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGTGCA AGCCTCGTCA GGACGAGCGT GCCGAAGACA ATCTGAAGCG CCAGGGTTAT 
GAATACTTTC GTCCACAATG CCTGCGGGAG CGCCTGATGC ATGGCGCTCT GCGGGTCCAG 
AGCGAATCGT TGTTCCCCGG TTATCTGTTC ATCCGCCTGG CTGCCGATGC CAACTGGGCT 
CCGCTGCGCT CGACTCGCGG GGTGAGTCGT CTGGTCAGCT TCGGCGACAT GCCGCTATCG 
GTTAGTGACG AGTTGGTCGC CGAGCTGCAA CGACGCATCG AGTCATCGCC CGAGCCAGCT 
CTGAAGCCTG GCGACAGGGT ACGGATCATC GCGGGAAGCT TCACGGAGTT GGATGCCATC 
TTCCTGGCGC TGGATGGTGA GGAGCGGGTT ACGCTATTGA TGAGGTTGCT CCATCGCGAG 
CACCGATTGA GCCTGCCTTT GGCAGACATA CGCAAATACT GA 

 

Protein sequence

MQCKPRQDER AEDNLKRQGY EYFRPQCLRE RLMHGALRVQ SESLFPGYLF IRLAADANWA 
PLRSTRGVSR LVSFGDMPLS VSDELVAELQ RRIESSPEPA LKPGDRVRII AGSFTELDAI 
FLALDGEERV TLLMRLLHRE HRLSLPLADI RKY