Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_12800 |
Symbol | lptB |
ID | 7760222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | - |
Start bp | 1247113 |
End bp | 1247838 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643804182 |
Product | LPS transport protein LptB |
Protein accession | YP_002798481 |
Protein GI | 226943408 |
COG category | [R] General function prediction only |
COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCC TCAAAGCCCA GCATTTGGCC AAAAGCTACA AGGGCCGCCA GGTCGTCCGC GACGTCAGCC TCTCCATCGA GAGCGGCCAG ATCGTCGGCC TGCTCGGTCC CAACGGCGCA GGCAAGACCA CCTGTTTCTA CATGATCGTC GGCCTGGTCC GTGCCGATCA GGGGCGTATC CTGGTCGATC AGGACGATGT AACCCATCTC CCCATGCACG GCCGCGCCCG GGTGGGTATC GGCTACCTGC CCCAGGAGGC TTCGATCTTC CGCAAGCTCA CGGTGGCCGA CAACATCATG GCGATTCTCG AAACGCGCAA GGATCTCGAC AAAGAAGGCC GCCGCCAGGC GCTCGAAGCC CTGCTGCAGG AGTTCCACAT CAGCCATATT CGCGACAGCC TCGGCATGAG CCTCTCCGGC GGCGAACGGC GTCGCGTCGA GATCGCCCGC GCCCTGGCCA CCACACCGAA GTTCATCCTG CTCGACGAAC CCTTTGCCGG CGTCGACCCG ATCTCGGTGA ACGATATCAA GCAGATCATC CACCACCTCA AGAACAAGGG CATCGGCGTC CTGATCACCG ACCATAATGT CCGTGAAACG CTGGATATCT GCGAAACCGC CTACATTGTC AACGATGGAC AATTGATAGC CGAAGGCGAC GCCGAGGCCG TCCTCACCAA CAAACTGGTG CAGGAGGTCT ATCTCGGCCA CGAATTCCGA CTATGA
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Protein sequence | MATLKAQHLA KSYKGRQVVR DVSLSIESGQ IVGLLGPNGA GKTTCFYMIV GLVRADQGRI LVDQDDVTHL PMHGRARVGI GYLPQEASIF RKLTVADNIM AILETRKDLD KEGRRQALEA LLQEFHISHI RDSLGMSLSG GERRRVEIAR ALATTPKFIL LDEPFAGVDP ISVNDIKQII HHLKNKGIGV LITDHNVRET LDICETAYIV NDGQLIAEGD AEAVLTNKLV QEVYLGHEFR L
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