Gene Avin_12104 details

Gene Information

• Locus tag: Avin_12104
• Symbol: pilA
• ID: 7760152
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 1164228
• End bp: 1164725
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 643804112
• Product: fimbrial protein
• Protein accession: YP_002798411
• Protein GI: 226943338
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4969] Tfp pilus assembly protein, major pilin PilA
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.246946
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGCTC AAGCGCAGAA TGGTTTTACC CTGATCGAAT TGATGATGGT GGTGGCGATC 
ATCGGGATTT TGGCTGCGGT AGCGTTGCCG GCTTATCAGG ATTACACTGC GCGTGCCAAG 
GTTTCCGAAG TTGTATTGGC AGCCTCCAGT TGCCGCATCG CGATTACCGA AGCCTCGCAG 
ATTGGTTTCG CTGCTGATGC AACCGCCGAT GGGTTCGGTT GTGGTGAGAC TGCTAGTGGT 
GCCGATGCTC CATCCCAGTA TGTGGCATCG GTTAACACCT CTGCAGTCGG GGTTATTACT 
GTCGTTGCCC AAAATATTTC CCAACTTGGC ACTAATACCG CTCTGGAGTT TGTTCCTTAT 
ACCGACGCAG GCTTGTCCGC CGCTGCTAGT GCTGCGGATT TCAATCGCAC AACTCTGAAC 
TCTGTAAAAG GATGGAAGTG TCAATCGGCC GCATCGAATG GCATAGAGTC TAAGTATCTG 
CCCGCTAGCT GTCGTTAA 

 

Protein sequence

MKAQAQNGFT LIELMMVVAI IGILAAVALP AYQDYTARAK VSEVVLAASS CRIAITEASQ 
IGFAADATAD GFGCGETASG ADAPSQYVAS VNTSAVGVIT VVAQNISQLG TNTALEFVPY 
TDAGLSAAAS AADFNRTTLN SVKGWKCQSA ASNGIESKYL PASCR