| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_10010 |
|---|
| Symbol | |
|---|
| ID | 7759946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 951836 |
|---|
| End bp | 953140 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643803906 |
|---|
| Product | DEAD/DEAH box ATP-dependent RNA helicase |
|---|
| Protein accession | YP_002798208 |
|---|
| Protein GI | 226943135 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00123792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTG CCTATCTTGG CTTGATCAAG CCTCTTCTGC GGACTTTGCC CGTACTCGGT
TACATCCTGC CCACGCCGGT GCAGCGCCAG GCGATTCCCG CGTTGTTGGC CGGCCGCGAC
CTGCTGGTGG CGGCGCAGAC CGGCAGCGGC AAGACCGCCG GCTTCGCCCT GCCGGTACTG
CAGCGGCTGA CCCTGGAGGG ATCGCCGGCC GCCGCCAACT CGGTGCGTGC GCTGGTGCTG
GTGCCGACCC GCGAACTGGC CGAGCAGGTC CATGGGACCA TCCGTGCCTG CGGCATGGAG
CTGCCGTTGC GGACCGCGGT GGCCTACGGC GGGGTGAGCA TCAATCCGCA GATGATGCTG
CTGCGTCCGG GGATCGACGT GCTGGTGGCC ACGCCCGGCC GGCTGCTCGA CCTGTACCGG
CAGAACGCCG TACGCTTCGA CCAGTTGCAG ATCCTCGTGC TGGACGAGGC CGATCGCATG
CTCGACCTGG GCTTCTCCCG CGAGCTGGAA GAACTGTTCG TCCTGCTGCC GGCGCAGCGC
CAGACCCTGC TGTGTTCGGC CACCTTCTCC GAGGAGATCC GCCAGATCGC CACCGGCCTG
CTGCGCGACC CGCTGACCAT CGAGATCAGC GCGCCCAACT CGGCGGCGCC GAGCGTCGCC
CAGTGGATGA TCCCGGTGGA CAAGAAGCGC AAGGCCGAGC TGTTCCTGCA TCTGCTGGAG
CGCGAGCGCT GGGAGCAGGT GCTGGTGTTC TCGCGCACCC GCAAGGGCGT CGAGCGGCTG
GCCGAGGAAC TGCAGCAGCG CGGCTACCGG GCCGGCGCGA TCCACGGCGA CCTGCCGCAG
CCGGCGCGCC TGCGCGCCCT GGAGCAGTTC AAGGCCGACG AGCTGCAGGT GCTGGTGGCC
ACCGACGTGG CTGCCCGCGG GCTGGACATC CAGGGCCTGC CGCTGGTGGT CAACCTCGAT
CTGCCGGTCG CCCCCGAATA CTACGTGCAC CGCATCGGCC GTACCGGCCG TGCCGGTGCC
AGCGGCGAGG CGATCTCGCT GGTCTGCGCC GACGAGGTCG AACAATTGGC CGCCATCGAG
GCGCTGATCC GCCAGTTGCT GCCGCGCCGC GAGGAGCCCG ACTTCAGCCC CGAGCACCGG
GTGCCGGAAA CCGCCCTGGG TGGCGTCATC CTGAGCAAGC CGAAGCAGCC CAGGCAGAAA
CCGGCCCCCA AATTCGGCGA CCGGCTCGAC GACAAGGCCC GGCCGGCAGT GGAAGCGGTA
CGCCAGATGC CCAATCTGAG TACGCCGCCG GACAGGAAGA AGTAG
|
|---|
| Protein sequence | MTFAYLGLIK PLLRTLPVLG YILPTPVQRQ AIPALLAGRD LLVAAQTGSG KTAGFALPVL
QRLTLEGSPA AANSVRALVL VPTRELAEQV HGTIRACGME LPLRTAVAYG GVSINPQMML
LRPGIDVLVA TPGRLLDLYR QNAVRFDQLQ ILVLDEADRM LDLGFSRELE ELFVLLPAQR
QTLLCSATFS EEIRQIATGL LRDPLTIEIS APNSAAPSVA QWMIPVDKKR KAELFLHLLE
RERWEQVLVF SRTRKGVERL AEELQQRGYR AGAIHGDLPQ PARLRALEQF KADELQVLVA
TDVAARGLDI QGLPLVVNLD LPVAPEYYVH RIGRTGRAGA SGEAISLVCA DEVEQLAAIE
ALIRQLLPRR EEPDFSPEHR VPETALGGVI LSKPKQPRQK PAPKFGDRLD DKARPAVEAV
RQMPNLSTPP DRKK
|
|---|
| |