Gene Avin_06260 details

Gene Information

• Locus tag: Avin_06260
• Symbol: rplD
• ID: 7759580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 607853
• End bp: 608455
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643803548
• Product: 50S ribosomal protein L4
• Protein accession: YP_002797852
• Protein GI: 226942779
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00260309
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAATTGA ATGTGAATGG CGCTCAGGCG ATCGAAGTCT CCGAGCGCAC CTTTGGCGGC 
GAGTTCAACG AGACCCTCGT GCACCAGGCA GTCGTCGCCT ATCTGGCCGG TGGCCGTCAG 
GGCAGCAAGC AGCAGAAGAA CCGCTCCGAT GTCAGTGGTG GCGGCAAGCG CCCCTGGCGC 
CAGAAGGGTA CTGGCCGTGC GCGCGCCGGT ACTAGCCGTG GTCCGCTCTG GCGTGGCGGT 
GGCGTGACCT TCGCCGCCCG CCCGCAAAAC CACGATCAGA AGCTCAACAA GAAGATGTAC 
CGCGCCGCTC TGCGCTCGAT CCTGAGCGAG CTCGTGCGTC AGGAGCGTCT GGTCGTCGTC 
GAAGATTTCG CCGTGGATGC TCCCAAGACC AAGAGCCTAG TGAGCAAGCT GGGCGGTCTG 
GGCCTGAGCG ACGTGCTGAT CGTCTCCGAT GCTGTGGATC AGAACCTGTA TCTGGCCGCC 
CGTAACTTGC CGCACGTCGA TGTTCGCGAT GTCCTGGGGT CCGATCCGGT CAGCCTGATC 
GCCTATGACA AGGTGCTGAT CACCGTGCCG GCCGTGAAGA AATTCGAGGA GCTGCTGGGA 
TGA 

 

Protein sequence

MQLNVNGAQA IEVSERTFGG EFNETLVHQA VVAYLAGGRQ GSKQQKNRSD VSGGGKRPWR 
QKGTGRARAG TSRGPLWRGG GVTFAARPQN HDQKLNKKMY RAALRSILSE LVRQERLVVV 
EDFAVDAPKT KSLVSKLGGL GLSDVLIVSD AVDQNLYLAA RNLPHVDVRD VLGSDPVSLI 
AYDKVLITVP AVKKFEELLG