Gene Avin_06250 details

Gene Information

• Locus tag: Avin_06250
• Symbol: rplC
• ID: 7759579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 607236
• End bp: 607838
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643803547
• Product: 50S ribosomal protein L3
• Protein accession: YP_002797851
• Protein GI: 226942778
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00608659
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGCA TTTTCACCGA AGAGGGTGTC TCCGTTCCGG TTACGGTCAT CGAGATCGAG 
CCGAACCGTG TGACCCAGTT CAAGAATGCA GAGAGCGACG GCTATCTGGC GGTGCAGGTC 
ACCGTCGGCG AGCGTCGGGC TTCGCGTGTG ACCAAGGCGC AGGCTGGTCA CTTCGCCAAG 
GCAAATGTCG CTGCCGGTCG TGGGGTCTGG GAGTTCCGCC TCGAAGAGGG CGAGTACCAG 
TCCGGCGACC AGATCACTGT CGAGATTTTC CAGGCCGGGC AGCTGGTGGA CGTCACCGGC 
CAGTCCAAGG GTAAAGGCTA CGCCGGCACC ATCAAACGCT GGAATTTCCG CGGTCAGGAC 
AATACCCACG GCAACTCCGT TTCCCACCGT GTTCCGGGCT CCATCGGCCA GTGCCAGACT 
CCTGGCCGTG TGTTCAAGGG CAAGAAAATG TCCGGTCATT TGGGCGCCGA GCGCGTGACC 
GTGCAGTCCC TGGAAGTGGT TCGTGTCGAC TCCGAGCGCA ATCTGCTGCT GGTCAAGGGT 
GCCATTCCCG GCGCTACCGG TGGCGATGTG ATCGTGCGTC CGGCGGCCAA GGCTCGCGGT 
TAA 

 

Protein sequence

MTRIFTEEGV SVPVTVIEIE PNRVTQFKNA ESDGYLAVQV TVGERRASRV TKAQAGHFAK 
ANVAAGRGVW EFRLEEGEYQ SGDQITVEIF QAGQLVDVTG QSKGKGYAGT IKRWNFRGQD 
NTHGNSVSHR VPGSIGQCQT PGRVFKGKKM SGHLGAERVT VQSLEVVRVD SERNLLLVKG 
AIPGATGGDV IVRPAAKARG