Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_03590 |
Symbol | ligB |
ID | 7759319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | - |
Start bp | 337991 |
End bp | 339673 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 643803283 |
Product | NAD-dependent DNA ligase LigB |
Protein accession | YP_002797594 |
Protein GI | 226942521 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.145228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCC GGATCGCGTT TTCCCTCCTG CTTCTACTGC CCTTCGCCTC GCCCGCTCTC GCCGACTCCG CCTGTCCGGA CTGGACAGCG CAACGCGCCG CCGCCGAACT GGCGGCGCTC GCCGAGCGCC TGCGCCAATG GGATGTGGCC TACCACCGCG ACGGCCGCTC GCCGGTGGCC GACGAACTCT ACGACCAGGC CCGCGCCCGC CTGGCCGACT GGAACCGCTG CTTTCCCGGC CAGGCCGACG CATCTCCCGA GCCCCTCGCC GGCAGTGCCG GCCCCCTGCT CCATCCGGTA CCGCACACCG GTCTTGCCAA ACTCGACGAG GCCGCGGTGC GGGACTGGAT GGCCACGCGC GAGGACCTCT GGACCCAGCC CAAGGTGGAC GGCGTGGCGG TCACCCTGGA ATACGCCGAC GGGCGCCTGC GACGCGCCAT CAGCCGCGGC GACGGCCGGC ATGGCCAGGA CTGGACGGCC CGGGTCCGGC GCCTGCCAGC GCTGCCGCGG CAACTGGCGG AAAGGCGACG CCTGATCCTG CAGGGCGAAC TCTACTGGCG GCTTCCCGGC CATGTGCAGG CCGAAGCCGG CGGACGGAGC GCGCGGGCCA GGGTCGCCGG CCTGCTGGCG CGCGACACCC TGGACGACGG GGACGCCGCC GGCATCGGCC TGTTCGTCTG GGACTGGCCG AACGGCCCGG CGGACATGCG CGCGCGACTG GACGGCCTGG AGCGGCTCGG CTTCGCCGAG GCGCGCCGCT ACAGCCGGCC GGTGGCGGAC TTCGCCACCG CGCGGCAATG GCGCGAGCGC TGGTATCGCG AGCCGCTGCC CTTCGCCAGC GACGGCGTGG TGCTGCGCCA GGGCCGCCGC CCGCCGGGCG AGCGCTGGCG GGCGGAGCCG CCGCACTGGG CGGTGGCCTG GAAGTATCCC CTCGCCCAGG CGCTGGCCGA GGTGCGCGCG GTGCGTTTTC GCATCGGCCG CAGCGGGCGC ATCACACCGC AACTGGAATT GCAGCCGGTA CGCCTGGACG ACCGGCAGAT CCGCCGGGTA GCCCTCGGCT CGCTGCGCCG CTGGCGGGAG CTGGACGTCC GTCCCGGCGA CCAGGTGGCG ATCCGCCTGG CCGGACAGAG CATTCCGCAG GTGGACGCCG TGGTCTGGCG CGCCGCCGAA CGCCCGGCGC TGCCCTCACC CGATCCGGCC GCCCACCACG CGCTGAGCTG CTGGCGGCCG CTGCCGGGCT GCGAGGAACA GTTCCTCGCC CGTCTCGACT GGCTCGGCGG CCGGCGCGGC CTGGACCTCC GCGGAGTCGG CCGCGGCACT TGGGAGGCAC TGCTGGAGAA CGGTCGGCTC GACGACCTGC TCGGCTGGCT GGAGCTGGAC GAAGCGCGCC TGGCCGAGCT GCCCGGCTTC GGCGAGCGCA GCGCCAGCCT GCTGGCCGAG CGTTTCCGCG CGGCGCGCCG GCGTCCCTTC CCGATGTGGC TGCGGGCTCT CGGCCTGCCG CCGGCCGGCG AGGCGACGCT GCCGCCCTCC TGGGACGAAC TGGCCGGGCG CGGCCCGGAG CAATGGCAGC GCGAGCCCGG CATCGGCCCC GGCCGTGCCC GCCAGTTGCA GGCCTTCTTC GCGCATCCGG AGGTGCAGGC GCTGCGCCAG CGCCTGCGGG CGGCGGGAGT CGAGGGCTTC TGA
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Protein sequence | MQRRIAFSLL LLLPFASPAL ADSACPDWTA QRAAAELAAL AERLRQWDVA YHRDGRSPVA DELYDQARAR LADWNRCFPG QADASPEPLA GSAGPLLHPV PHTGLAKLDE AAVRDWMATR EDLWTQPKVD GVAVTLEYAD GRLRRAISRG DGRHGQDWTA RVRRLPALPR QLAERRRLIL QGELYWRLPG HVQAEAGGRS ARARVAGLLA RDTLDDGDAA GIGLFVWDWP NGPADMRARL DGLERLGFAE ARRYSRPVAD FATARQWRER WYREPLPFAS DGVVLRQGRR PPGERWRAEP PHWAVAWKYP LAQALAEVRA VRFRIGRSGR ITPQLELQPV RLDDRQIRRV ALGSLRRWRE LDVRPGDQVA IRLAGQSIPQ VDAVVWRAAE RPALPSPDPA AHHALSCWRP LPGCEEQFLA RLDWLGGRRG LDLRGVGRGT WEALLENGRL DDLLGWLELD EARLAELPGF GERSASLLAE RFRAARRRPF PMWLRALGLP PAGEATLPPS WDELAGRGPE QWQREPGIGP GRARQLQAFF AHPEVQALRQ RLRAAGVEGF
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