| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_02120 |
|---|
| Symbol | trpB |
|---|
| ID | 7759173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 205981 |
|---|
| End bp | 207201 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643803137 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_002797448 |
|---|
| Protein GI | 226942375 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA CTTCCTACCG CACCGGCCCC GACGAAAAAG GCCTGTTCGG CCGTTTCGGC
GGCCAGTACG TCGCCGAAAC CCTGATGCCG CTGATCCTCG ACCTGGCCGA GGAATACGAG
AGGGCCAAGG TTGATCCGGC CTTCCTCGAA GAACTGGCCT ACTTCCAGCG CGACTACGTC
GGCCGGCCGA GCCCGCTGTA TTTCGCCGAG CGCCTGACCG AGCACTGCGG CGGCGCGAAG
ATCTACCTCA AGCGCGAAGA GCTGAACCAC ACCGGCGCGC ACAAGATCAA CAACTGCATC
GGGCAAATCC TGCTGGCCCG GCGCATGGGC AAGCAGCGCA TCATCGCCGA GACCGGCGCC
GGCATGCACG GCGTGGCCAC CGCCACCGTG GCCGCGCGCT TCGGCCTGCA GTGCGTGATC
TACATGGGCA CCACCGACAT CGATCGCCAG CAGGCCAACG TCTTCCGCAT GAAGCTTCTT
GGCGCCGAGG TGATCCCGGT CACCGCCGGC ACCGGCACCC TCAAGGACGC CATGAACGAG
GCCCTGCGCG ACTGGGTGAC CAACGTCGAG ACCACCTTCT ACCTGATCGG CACCGTGGCC
GGCCCGCATC CGTACCCGGC GATGGTCCGC GATTTCCAGG CGGTGATCGG CAAGGAAACC
CGCGAGCAAC TGATCGAGAA GGAAGGGCGC CTGCCCGACT CGCTGGTCGC CTGCATCGGC
GGCGGCTCCA ACGCCATGGG CCTGTTCCAC CCCTTCCTCG ACGAGCCGGG CGTGAAGATC
GTCGGCGTCG AGGCCGCCGG CCACGGCATC GAGACCGGCA AGCACGCGGC CAGCCTGAAC
GGCGGCGTGC CCGGCGTGCT GCACGGCAAC CGCACCTTCC TGCTGCAGGA CGCCGACGGC
CAGATCATCG ACGCCCACTC GATCTCCGCC GGCCTCGACT ACCCCGGCAT CGGCCCGGAA
CATGCTTGGC TACACGACAT CGGCCGCGTC GAGTACAGCT CGATCACCGA CCATGAAGCG
CTGCAGGCCT TCCATACCTG CTGTCGCCTG GAGGGCATCA TCCCGGCGCT GGAGTCGTCC
CATGCCCTGG CCGAAGTGTT CAAGCGCGCG CCCCGGCTTC CGAAAGACCA CCTGATGGTG
GTCAACCTCT CCGGCCGCGG CGACAAGGAC ATGCAGACCG TGATGCATCA CATGCAGGAA
AAACTGGAGA AGCACGCATG A
|
|---|
| Protein sequence | MTETSYRTGP DEKGLFGRFG GQYVAETLMP LILDLAEEYE RAKVDPAFLE ELAYFQRDYV
GRPSPLYFAE RLTEHCGGAK IYLKREELNH TGAHKINNCI GQILLARRMG KQRIIAETGA
GMHGVATATV AARFGLQCVI YMGTTDIDRQ QANVFRMKLL GAEVIPVTAG TGTLKDAMNE
ALRDWVTNVE TTFYLIGTVA GPHPYPAMVR DFQAVIGKET REQLIEKEGR LPDSLVACIG
GGSNAMGLFH PFLDEPGVKI VGVEAAGHGI ETGKHAASLN GGVPGVLHGN RTFLLQDADG
QIIDAHSISA GLDYPGIGPE HAWLHDIGRV EYSSITDHEA LQAFHTCCRL EGIIPALESS
HALAEVFKRA PRLPKDHLMV VNLSGRGDKD MQTVMHHMQE KLEKHA
|
|---|
| |