| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_01620 |
|---|
| Symbol | nifU |
|---|
| ID | 7759125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 153425 |
|---|
| End bp | 154363 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643803084 |
|---|
| Product | Nitrogen fixation Fe-S cluster scaffold protein |
|---|
| Protein accession | YP_002797400 |
|---|
| Protein GI | 226942327 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
|---|
| TIGRFAM ID | [TIGR02000] Fe-S cluster assembly protein NifU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGATT ATTCGGAAAA AGTCAAAGAG CACTTCTACA ACCCCAAGAA TGCTGGAGCC
GTGGAAGGCG CCAACGCCAT CGGCGACGTC GGATCGCTGA GTTGCGGTGA TGCGCTGCGC
CTGACCCTGA AGGTGGACCC GGAAACCGAC GTGATTCTGG ATGCCGGCTT CCAGACCTTC
GGCTGTGGTT CCGCCATCGC TTCCTCCTCG GCGCTGACCG AGATGGTCAA GGGCCTGACC
CTGGACGAGG CGCTGAAGAT CAGTAACCAG GACATCGCCG ACTACCTCGA TGGCCTGCCG
CCGGAGAAGA TGCACTGCTC GGTGATGGGC CGCGAAGCCC TGCAGGCCGC GGTGGCCAAC
TACCGTGGCG AGACGATCGA GGACGACCAC GAAGAGGGCG CGCTGATCTG CAAGTGCTTC
GCCGTCGACG AGGTGATGGT CCGCGATACC ATCCGTGCCA ACAAGCTGTC TACCGTTGAG
GACGTGACCA ATTACACCAA GGCCGGCGGT GGCTGCTCCG CCTGCCACGA GGCTATCGAG
CGCGTGCTGA CCGAAGAGCT GGCCGCTCGC GGTGAAGTCT TCGTCGCGGC CCCGATAAAG
GCCAAGAAGA AGGTCAAGGT GCTCGCCCCC GAGCCGGCTC CCGCCCCGGT GGCCGAAGCC
CCGGCGGCTG CCCCGAAGCT GAGCAACCTG CAGCGCATCC GTCGCATCGA GACCGTGCTG
GCGGCGATCC GTCCGACCTT GCAGCGCGAC AAGGGCGACG TCGAACTGAT CGATGTCGAC
GGCAAGAACG TTTATGTCAA GCTCACCGGC GCCTGCACCG GCTGCCAGAT GGCCAGCATG
ACCCTCGGCG GCATCCAGCA GCGCCTGATC GAGGAGCTCG GCGAGTTCGT CAAGGTGATT
CCGGTCAGCG CTGCGGCTCA CGCGCAGATG GAGGTCTGA
|
|---|
| Protein sequence | MWDYSEKVKE HFYNPKNAGA VEGANAIGDV GSLSCGDALR LTLKVDPETD VILDAGFQTF
GCGSAIASSS ALTEMVKGLT LDEALKISNQ DIADYLDGLP PEKMHCSVMG REALQAAVAN
YRGETIEDDH EEGALICKCF AVDEVMVRDT IRANKLSTVE DVTNYTKAGG GCSACHEAIE
RVLTEELAAR GEVFVAAPIK AKKKVKVLAP EPAPAPVAEA PAAAPKLSNL QRIRRIETVL
AAIRPTLQRD KGDVELIDVD GKNVYVKLTG ACTGCQMASM TLGGIQQRLI EELGEFVKVI
PVSAAAHAQM EV
|
|---|
| |