| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_00610 |
|---|
| Symbol | |
|---|
| ID | 7759028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 63054 |
|---|
| End bp | 64073 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643802987 |
|---|
| Product | Type I secretion protein, HlyD family |
|---|
| Protein accession | YP_002797303 |
|---|
| Protein GI | 226942230 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.211465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAA AGCGTTTTCT CGCGGTAGCG CTCCTGTCGA CCGCGCTCGT CGCCGGCGGC
CTGTACTGGT GGCAGCGGCG CGACGACGGC CCTGGCGATG TCCTGACCCT GTACGGAAAC
GTCGATATCC GCCAGGTCGC GCTGGCCTTC GAAGGCAGCG ACCGGATCGC CGAGATGCGC
GTGGAGGAAG GCGACCGCGT CCACGCCGGG CAGGTGCTGG CGATGCTGGA CACGCGCACC
CTCCGCTTGC AACTGGAGCA GGCCGTGGCG CAGGTCGGGG TGCTCGAACA GAGCCTGCTG
GCCCTGCGTA ACGGCAGCCG CCCGGAGGAG ATCGCGCAGG CCGACGCCCA GGTCGTCGCC
GCCGCCGCCG AGGTCGAGCG CAGCCGCCTG CAATTCCGGC GCCTGCACGA CGCTTCCATG
CGGACCGGCG GGCACGCCGT GAGCCGGCAG GATCTGGACA ACGCCCGGGC CCAGTTGCGC
GTGGCGCAGG CGCAGTTGGA CGCGCAACGA CAGGCGCAGC GCCTGGCCAG GATCGGACCG
CGCCAGGAGG ACATCGCCCG CGCCGAGGCG CAATTGCGGG CGGCGCAGGC CGAGCGGGCG
TTGCTCCAGC ACCGCATCGA CCTGGCCGAG CTACGCGCGC CGCAGGCCGC CGTGGTGCGC
GCGCGGCTGC TGGAGCCGGG CGATATGGCC TCGCCGCAGC AGCCGGCCTA CACGCTGGCG
CTGAGCGACC CCAAATGGGT GCGCGCCTAT GCGAACGAGG TCGAACTGGG CCGCATCCGG
CCGGGCATGG CCGCCACGGT CGTCACCGAC AGCGCACCGG ACGCACCGAT CGACGGACGG
GTGGGTTTCA TTTCCTCGGT CGCCGAGTTC ACGCCCAAGT CCGTGCAGAC CGAGGACCTG
CGCACCAGCC TGGTCTACGA GGTGCGCATC CTTGTCGACG ATCCGCGCGA CAGGCTGCGC
CTGGGCATGC CCGCCACGAT CCGGCTGGTC GCCGATGCGG AGACGAAGGA ACGACCATGA
|
|---|
| Protein sequence | MTKKRFLAVA LLSTALVAGG LYWWQRRDDG PGDVLTLYGN VDIRQVALAF EGSDRIAEMR
VEEGDRVHAG QVLAMLDTRT LRLQLEQAVA QVGVLEQSLL ALRNGSRPEE IAQADAQVVA
AAAEVERSRL QFRRLHDASM RTGGHAVSRQ DLDNARAQLR VAQAQLDAQR QAQRLARIGP
RQEDIARAEA QLRAAQAERA LLQHRIDLAE LRAPQAAVVR ARLLEPGDMA SPQQPAYTLA
LSDPKWVRAY ANEVELGRIR PGMAATVVTD SAPDAPIDGR VGFISSVAEF TPKSVQTEDL
RTSLVYEVRI LVDDPRDRLR LGMPATIRLV ADAETKERP
|
|---|
| |