| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_a009 |
|---|
| Symbol | |
|---|
| ID | 7409785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012040 |
|---|
| Strand | + |
|---|
| Start bp | 11616 |
|---|
| End bp | 14390 |
|---|
| Gene Length | 2775 bp |
|---|
| Protein Length | 924 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 643718704 |
|---|
| Product | secretion/conjugal transfer ATPase VirB3/4 |
|---|
| Protein accession | YP_002576133 |
|---|
| Protein GI | 222778496 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACT ATTTTGATCC GCTCTTTAAA GGATTAACAC GCCCTGCACT CCTTTTTGGA
GTGCCTTTAG TACCTTTTAT AATAAACATT TTAGGATTTA TCTTAATAGC TGTTTATACA
CAACAATTTT TCCTTTTAAT TTTTGGAGTT ATTTCTTATT TTATTATGAA AGCAATGACT
AAGAAAGATG AGCAAATGTT TAGATTGTTT TTTTTAAAAA CTAAATTTAT TAGTAATTTT
TTGAGTAGAA AATACCATAA AGCTAAAACT TTTAATAGCG TAAGCTATAA ACGATTGCCA
ACTAATAATG ATTTTCCAAA ATTATCTATA TTTCCACTTC ATGCTGAACC AAGTTTAGAG
AAATTAATTC CTTATAGCTC TTTACTTACA GATAGTATTG TTATTACAAA AGAACATATG
CTAATTAGCA CATTTTTTAT TGAGGGTATA GAATTTGAGT GTGAGTCAGA TGAGAATTTA
ATTTTTAAAA AAAATCTTTT AAATATGATG ATAATGTCAT TTTCTAATGA ACCTATTGCT
TTTTATTTTC ATAATGTAAG ATTTAAATTA CATGAATTTT TAGATTCTCA TTTTGAAAAT
TCTTTTTTAA AGGAAATTGA TGAGAAATAC CATAAGAGTT TTGATAAAAA AAGTTTTCAG
CAAAATTCGC TTTATTTAAC TTTGGTCTAT AAGCCTTTAA AATCTAATAT TGATCTAAAG
ACTTTCAATA AATTAAATTA CAAATCAAAA GCAAAAGAAA TTTCAAATTT TGTTCTTAAA
TTCCAAGAAT ACTTAGGAAA ACTTGAAGCT AACATTAAAG ATTTTAAACC AAAAATATTA
AGTGTATATA AAAAGAATAA TATTAAATAT TCCGAGCAAT TAGAATTTTA TAATTATTTA
ATAGGTGGAA AATTTAATCC TGTTGTAGTT TGTGATACTC CGATATATCA ATATCTAACA
GGAACTTTAA AAAATATTCA ATTTAACCAC GATATGATTC AGCTAAACTA CAATGATGAT
ACAAAAAGAT TTGCTAGGAT TATTGAAATT AAAGATTATT CTAATGAAAC TTTTTCAGGT
ATTTTAGATT CTTTAATGTA CCTTGATGTA GATTATACTA TTACTCAAAC TTTTGTCCCT
TTATCAAAAT ATGATTCAAA ATCAGCATTA AACAAACAAA TCAATCAACT AATTTCAAGT
GAAGATGATG GCGTAAGTCA GATAGAGCAA TTAAATTTAG CATTAGATAA TTTAATTAGT
AATGTTATAA GTTTTGGAAA TTATCATTTT AATATTTGTG TTTTTGGTGA TAGCATTGAT
GAATGCAAGA AAAATACTAA TAAAGTAATA ACTTCATTAA ATAGTTTAGG CTTTACTTCA
ACATTAGCAA ATATTGCACT ACCTGCTTCT TATTTTTCAC AATTTCCAAG TAATTTTGCA
ATACGCCCAA GAGTTCATAT GATCTCATCT TTAAATTTTT CATCTTTGGT TGCATTACAT
AATTTCTTAA TGGGCAAAAA AGAAAAAAAT TGCTGGGGCG ATGCTGTAAC TATTTTAAAA
ACACCAAATA AACAACCATA TTTTTTAAAT TTCCACAAAA GCGATGGAAA AAACAAAGAT
GAATTTGGTG ATTTGAATTT AGCTAATACT TTGATTTTAG GTCAAAGTGG TGGTGGTAAA
ACCGTGTTTA TGAATTTTAT CATTAATCAA ATGATAAAGT ATGCTAATAA AGATAGCTTT
CCTGCAAACA TACCTGAAGA TAAAAAGAAA TTTACAGCTG TATTTTTAGA TAAAGATAAA
GGTGCTTTAG GCAATATTCT TTGTGCTGGT GGTAGATATA TTTCTATTAA AAATGGTAAG
CCTACTGGGT TTAATCCTTT TATGGTTGAA ACTAATGAAG AAAATTTAAG ATTTTTAAAA
CAACTAATAA AACTATGTGT AACACGCAAT GGCGAAATTC TTAATACAAA AGAAGAAAAA
CAAATTAATG AAGCTGTAAA TACTCTAATG TTTCAATTTG AAATTTCTGA AAGAAAATAT
CCTATTTCTT TACTTCTTGA AAATATTACA GATGATTTTA ATGACAATAA CTCTTTAAAA
AGTAGATTGT CTTTATTCCA AAAAGGAAAA CAATTTGGCT GGGTGTTTGA TAATGAATAT
GACAACCTAG ATTTTCCTGA TGATATTAAT TTATTTGGTA TTGATGGAAC TGAATTTTTA
GATGAAAAAG ATGTTTCAGC ATTAATCTCT TATTTTATTC TTTGGCGTGT TATGAATTTA
GCAGACGGAA GAAGACTTTG TATAGATATT GATGAAGCTT GGAAGTGGTT AGAAAATGAT
ATTGTGGCAG AAGAAGTAAA AAACAAGTTT AAAACCATAA GAAAACAAAA TGGCTTTTTA
AGACTTGCTA CACAAAGTAT AGAGGACTTT TTAAAACTAA AGATAGCAAA TACTCTAGTT
GAGCAATCTG CGACAAAAAT ATTTTTACCA AACCCTTTAG CAAAAGAAGA TGAGTATTTA
AGACTAGGTC TTAGCAAAGA TGAATTTTTA ATAGTTAAAA ACTTTGCCCC ACATAAACGA
CAATTCCTTG TTAAAAGACA AGATGAAGCA GTTGTTTGCT CTTTGGATCT TTCATCTTTA
GGCAAAGAAA ACCTAAAAAT TTTATCTACA GGCACAAGCT ATATAGAAAA AATAGAAAAT
ATCTTTAATC AAGAAAACAA AACTTTGGAA GAAAAAATCA ATGAACTTAA AACATTTTAT
AAGGAAGAAC AATGA
|
|---|
| Protein sequence | MNNYFDPLFK GLTRPALLFG VPLVPFIINI LGFILIAVYT QQFFLLIFGV ISYFIMKAMT
KKDEQMFRLF FLKTKFISNF LSRKYHKAKT FNSVSYKRLP TNNDFPKLSI FPLHAEPSLE
KLIPYSSLLT DSIVITKEHM LISTFFIEGI EFECESDENL IFKKNLLNMM IMSFSNEPIA
FYFHNVRFKL HEFLDSHFEN SFLKEIDEKY HKSFDKKSFQ QNSLYLTLVY KPLKSNIDLK
TFNKLNYKSK AKEISNFVLK FQEYLGKLEA NIKDFKPKIL SVYKKNNIKY SEQLEFYNYL
IGGKFNPVVV CDTPIYQYLT GTLKNIQFNH DMIQLNYNDD TKRFARIIEI KDYSNETFSG
ILDSLMYLDV DYTITQTFVP LSKYDSKSAL NKQINQLISS EDDGVSQIEQ LNLALDNLIS
NVISFGNYHF NICVFGDSID ECKKNTNKVI TSLNSLGFTS TLANIALPAS YFSQFPSNFA
IRPRVHMISS LNFSSLVALH NFLMGKKEKN CWGDAVTILK TPNKQPYFLN FHKSDGKNKD
EFGDLNLANT LILGQSGGGK TVFMNFIINQ MIKYANKDSF PANIPEDKKK FTAVFLDKDK
GALGNILCAG GRYISIKNGK PTGFNPFMVE TNEENLRFLK QLIKLCVTRN GEILNTKEEK
QINEAVNTLM FQFEISERKY PISLLLENIT DDFNDNNSLK SRLSLFQKGK QFGWVFDNEY
DNLDFPDDIN LFGIDGTEFL DEKDVSALIS YFILWRVMNL ADGRRLCIDI DEAWKWLEND
IVAEEVKNKF KTIRKQNGFL RLATQSIEDF LKLKIANTLV EQSATKIFLP NPLAKEDEYL
RLGLSKDEFL IVKNFAPHKR QFLVKRQDEA VVCSLDLSSL GKENLKILST GTSYIEKIEN
IFNQENKTLE EKINELKTFY KEEQ
|
|---|
| |