| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1500 |
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| Symbol | pbpC2 |
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| ID | 7411246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | - |
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| Start bp | 1444608 |
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| End bp | 1446812 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 643718622 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_002576056 |
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| Protein GI | 222824482 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAATCA AAATAAGCCT TGTAGTATGC TTTTTAAGCC TATGTTTTTA CATAGGCTTA
GTTTATTTTA GTTTTGATAG CAAGGATTTG TTTAAAGGCA CTTATAGCAA GGTTTTACTG
GATAAAAACA AAGAAATTCT TAGTGTATTT TTAGATTCTA ACGAACAATG GCATTTAGAG
AGTGAGTTTA TACCGCAAAA ATTAAAAAGT GCAGTTATTT TGTATGAAGA TAAAAAATTT
TATTCTCATT ATGGAGTAGA TTTTTTAGCG CTTATAAGAG CTTTTAAAAA TAATCTTTTT
TCAAGCAAAA GAAGTGGTGC AAGTACAATT TCTATGCAAA CAATTAAACT TTTAGAGCAA
AACAAACGCA CATATTTTAA TAAATTTAAC GAAATCATCA AAGCTTTTGC TTTAGAAAGT
GCTTATGATA AGGAAGAAAT TTTAAGACTT TATTTAAACA ATGCCCCTTA TGGGGGAAAT
TTAGTAGGTG TTGCAAGTGC GGGTTTGTTT TATTTTGAAA AAGATTTAAA AGATCTTACT
TGGAGTGAAG CAGCCTTGCT TGCAGTACTT CCTAATAATC CAGGTTTAAT TAATCTTGAA
AAAAACAAAG ATAGACTTTT AAAAAAACGC AATGCTTTGC TTGATAGGCT TTTTGAAAAG
GGATATTTTT CTAAAGATAT CTTAACTCTT GCAAAGGCTG AAAAACTTCC TAGTTTTAAA
GCAAGAAAAA ACTTAGCTCC ACATTTAGCG CGTAAGCTTT TAGCAGATAA AGAACAAATC
GTTTCTAGTA TAGATAAAAA AATTCAAGTC AAATTTGAAG AAAAGGCTAA AGAATATTCT
TATAAACTAC AACAAAAAGG CATAAAAAAT CTAGCTATAT TGTTAGCAGA TACCAAAACA
AATAAAGTTT TAGCTTATGT AGGCTCTAAT GATTTTTATG ATTTTGCAAG TTTTGGTCAA
GTTGATGGGG TGATAGCAAA GCGTAGTGTG GGCTCAACCT TAAAACCTTT GCTTTTTGCT
TTTGCCATAG ATGAGGGACT TATAGTGCCT GAATCTTTAA TGCTTGATGT ACCTACATTT
TTTTCTAACT TTGCTCCACA AAATGCAAAT AAAAAATACC ATGGTTTTAT TAGCGCAAAA
GAATCTTTGC AAAAATCACT TAATGTTCCT TTTGTAAGCT TACTTGCAGA ATATGGGTAT
GAGAAGTTTT TTTATGAACT CAAAGATATT TTAGATTTTG AAGATGAAAA TTTTAAAAAA
TACGGACTTT CTTTGATTTT GGGCACAAAA GAATTTAGTT TAGAAGATAT GGTAAAAATC
TATCTAGGAC TTGGAAATTA TGGAAATTTT AAAGAGCTTT TATATGAAGA AAATGCATTT
ATTAAAAAAG ATAAGAAACT TGTTAGTGAT GGAGCAAGCT TTTTAACCTT ACAAACCTTA
AAGGATTTAG ATAGAACAGG TTTAAGGCAA TATGATTTTA ATACTATCAT TTCTTGGAAA
ACAGGCACAA GTTATGGTAG AAAAGATGCT TGGGCTATAG GAACTTCTCC AAAATACACT
TTAGGAGTAT GGGTTGGAAA TTTTAATGGC GAGGCAAATG CAAATTTATA TGGTGTGAGT
ATAGCAGGAG AGTTGTTTTT TGAGCTTTTA TCTTTACTTG ATGGGTTGAA TTTAGAATTT
GAAAAACCTA ATGATTTAGC TTCTATCAAA ATTGAAAATC AAACAGGATA TAGATATGAT
TATAAATTTG ACTTTAAAGA GGTACTTTAT CCACAAAGCG CAAATGTTTT AAGAACTTCA
CCATTTTTAA AAGAAGTTTT TATGTATAAA AACAAAGAAA TTAATTCTTT AGATGAAAAT
TTCATCCATG CAAAGAAAAA GATTATATTA AATTTACCTT CTCATGCGCA AGCATTTTTT
GCAAAAGAAA AACACAATTT ACCAAGTTTT AATCAAAAAT TAAAAATCAT ATATCCATTA
AATAACCTTA ATATCATCTT GCCAAAAGAC TTAAAATCAA AACAAAAATT GCTTGTTAAA
ATTTCAAACC CAAAAAAAGA AAAACTTTTT TGGTATTTAA ATCAAGAACT AATTTTTGAA
GGCAAGGAAG AATCTTTAGC CTTAAATTTA AAAAAAGGTA AATATACTAT TAATATTATT
AGTGAAAATG GATATAATGA TTTTTCTACT TTTAATATAT TTTAA
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| Protein sequence | MKIKISLVVC FLSLCFYIGL VYFSFDSKDL FKGTYSKVLL DKNKEILSVF LDSNEQWHLE
SEFIPQKLKS AVILYEDKKF YSHYGVDFLA LIRAFKNNLF SSKRSGASTI SMQTIKLLEQ
NKRTYFNKFN EIIKAFALES AYDKEEILRL YLNNAPYGGN LVGVASAGLF YFEKDLKDLT
WSEAALLAVL PNNPGLINLE KNKDRLLKKR NALLDRLFEK GYFSKDILTL AKAEKLPSFK
ARKNLAPHLA RKLLADKEQI VSSIDKKIQV KFEEKAKEYS YKLQQKGIKN LAILLADTKT
NKVLAYVGSN DFYDFASFGQ VDGVIAKRSV GSTLKPLLFA FAIDEGLIVP ESLMLDVPTF
FSNFAPQNAN KKYHGFISAK ESLQKSLNVP FVSLLAEYGY EKFFYELKDI LDFEDENFKK
YGLSLILGTK EFSLEDMVKI YLGLGNYGNF KELLYEENAF IKKDKKLVSD GASFLTLQTL
KDLDRTGLRQ YDFNTIISWK TGTSYGRKDA WAIGTSPKYT LGVWVGNFNG EANANLYGVS
IAGELFFELL SLLDGLNLEF EKPNDLASIK IENQTGYRYD YKFDFKEVLY PQSANVLRTS
PFLKEVFMYK NKEINSLDEN FIHAKKKIIL NLPSHAQAFF AKEKHNLPSF NQKLKIIYPL
NNLNIILPKD LKSKQKLLVK ISNPKKEKLF WYLNQELIFE GKEESLALNL KKGKYTINII
SENGYNDFST FNIF
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