Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cla_1074 |
Symbol | pbpA |
ID | 7410808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter lari RM2100 |
Kingdom | Bacteria |
Replicon accession | NC_012039 |
Strand | + |
Start bp | 1029281 |
End bp | 1031215 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 643718200 |
Product | penicillin-binding protein 1A |
Protein accession | YP_002575647 |
Protein GI | 222824073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAAAA TTTTAAAAAT ATTTCTTTCT TTTTGTGTAG TATGTGCGGT TGGAATTTTT ATATTTATTG CATATTTGTT TTCAGATTCT GATTTAAATC AATACACCTT TAAAGATTAC AAACCACCTC TTACAACACA AATTTTTGAT AAAAATGGAA AATTAGTTGC AAATGTTTTC GAGCAACACC GCTTTTACGC TCCTTATGAA GAGTTGCCTC CAAGACTTAT AGAAGCTTTA GTGGCCATTG AAGATACTAG CTTTTTTGAA CATGGTGGGG TTAATATAGA TGCGATTTTT AGAGCAGCTA TTAAAATCAT AAGAAGTGGT GGAAAAACCA TGGAAGGAGC TTCCACTCTT ACGCAACAAT TCATAAAAAA CACAGAATTA ACCCCAGAGC GTACTTTGAG TAGAAAGCTA AAAGAAGCTT TACTTGCATA TAAAATAGAA AATACTTTAA CTAAAGAGCA AATTTTAGAA AGATATTTAA ATTTCATCTT CTTTGGACAT GGATATTATG GAGTAAAAAC TGCTGCGCTT GGGTATTTTA GAAAAAATTT AGATGATCTT AGCTTGAAAG AAATTGCCAT TTTGGTAGGT ATGCCAAAGG CTCCAAGCAC TTATGATCCT ACTAGACATT TAGATCTTTC TTTAGCTAGA GCAAACAGCG TAGTACAAAG AATGTATAAT CTTGGTTGGA TTTCTAAAGA AGAGTATGAA AATGCTTTAA AAGAAATTCC AAAAGTATAT GATGATACTT TAACACAAAA TGCAGCCCCT TATGTTACTC AAGAAGTTTT AAAACAACTA AGTGGTATAA AAGATCTTAA AAGTGGTGGT TATAAAATAG AGCTTGCTAT CGATCTTGAT GTGCAAAATA TTGCAAGAGA GGCTTTAAAA TTTGGCTATG ACGAGATAAT AAAAAGAGAC AAAGATGCAA ATTTAAGTAC ACTTAATGGA GCTATGATAG TAGCAAATCA CCAAAATGGA GATATATTAG CCTTAGTAGG TGGGGTAAAT TACACAAAAA GTAATTTCAA CCGCGCCACT CAAAGCTTAA GACAGCCTGG AAGTTCTTTT AAGCCTTTTT TATACCAAAT TGCCATTGAC ATGGGTTATT CTCCTATGAG TAAAGTTGCT GATATTTCAA GAATTTTTGA AAGCACCAAA GAAGATGAGA AAGATTGGAA ACCTAAAAAT TATGGGGGAA AATTTCTAGG GCTTATAAGT TTAAAAGAAG CACTAACTGG ATCAAGGAAC CTAGCTACCA TAAATTTAGC TCTTGCCTTA GGGCTTGATG TAATCCATGA TAAACTTCAA TTTATGGGCT TTGAGAATAT ACCGGTTGAT TTATCTATAG TTTTGGGTAG CTTTGGGATT TCTATTTATG ATTATGCTAA ACTTTATACA GTATTTGGAA ATTATGGCGT GCAAAAAGAT TTAATACTCA TTAAAAGAGT AATCGATAAA AATGGCAAAA TAATAGTAGA GTTTAACTCC GGAGAAAGAA AAATCAGCGA ACCCGAACAA GCCTTTTTAG TTAATGATAT GATGCAAAAT GTTGTTAAAA AAGGTACTGG ACGCAATGCT AGGGTAGAAG GGATTGAGAT AGCTGGAAAA ACAGGTACTT CAAATAAAAG CGTAGATGCT TGGTTTTGTG GCTTAACTCC AGAAATAGAA GCTATTATTT GGTATGGAAA TGATGATAAT AAACCTATGA AACAAATCGA AGGTGGTGCA AGGACTGCTG CTCCGGTTTT TAAAGAATTT TTAACAAAAT ACCTAGAACT TTATCCTGAT AGCGCTAGAA AATTTATCAT CCCAAAAGGA GTTTATCAAG GAATTTATGA AAAACAAAGA GAGTATTACA CCAATACTTC TCCATTTCCA AAAAACAACC CTGCTCTATC TGAAAACAAT GAGATAATTT TTTAA
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Protein sequence | MIKILKIFLS FCVVCAVGIF IFIAYLFSDS DLNQYTFKDY KPPLTTQIFD KNGKLVANVF EQHRFYAPYE ELPPRLIEAL VAIEDTSFFE HGGVNIDAIF RAAIKIIRSG GKTMEGASTL TQQFIKNTEL TPERTLSRKL KEALLAYKIE NTLTKEQILE RYLNFIFFGH GYYGVKTAAL GYFRKNLDDL SLKEIAILVG MPKAPSTYDP TRHLDLSLAR ANSVVQRMYN LGWISKEEYE NALKEIPKVY DDTLTQNAAP YVTQEVLKQL SGIKDLKSGG YKIELAIDLD VQNIAREALK FGYDEIIKRD KDANLSTLNG AMIVANHQNG DILALVGGVN YTKSNFNRAT QSLRQPGSSF KPFLYQIAID MGYSPMSKVA DISRIFESTK EDEKDWKPKN YGGKFLGLIS LKEALTGSRN LATINLALAL GLDVIHDKLQ FMGFENIPVD LSIVLGSFGI SIYDYAKLYT VFGNYGVQKD LILIKRVIDK NGKIIVEFNS GERKISEPEQ AFLVNDMMQN VVKKGTGRNA RVEGIEIAGK TGTSNKSVDA WFCGLTPEIE AIIWYGNDDN KPMKQIEGGA RTAAPVFKEF LTKYLELYPD SARKFIIPKG VYQGIYEKQR EYYTNTSPFP KNNPALSENN EIIF
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