Gene Cla_0918 details

Gene Information

• Locus tag: Cla_0918
• ID: 7410498
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: -
• Start bp: 877695
• End bp: 879626
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 643718046
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_002575493
• Protein GI: 222823919
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component
• TIGRFAM ID: [TIGR03608] putative bacteriocin export ABC transporter, lactococcin 972 group

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATACGCT TAGAAAATAT ACAAAAAAAG ATTAATAATA CAACTATTTT AGAAAATATT 
AATCTTTATA TTCAAAAGGG AGAATTTGTA GCCATTATAG GACAATCAGG AAGTGGAAAA 
ACATCTCTTT TAAATATTAT AGGAACGCTT GATGAGCCAA GTAGTGGAAA ATATTTTTTA 
GATGCATATG AAGTTACAAA TTTAAACAAA GATGAAAAAG CAAGGATTAG ACGCGAAAAA 
ATTGGTTTTA TTTTCCAAAG ATATAATCTA CTTAGTCTTT TAAATGCTAA AGATAATGTA 
GCATTGCCTG CTGTGTATGC GGGTAAAAAC AAACATGAAA GATCGCAAAA GGCTAAAGAA 
TTACTTTCTT TTTTAGAGCT TGATCATAAA GAACTTTCTA AGCCAAATGA GTTAAGTGGC 
GGCCAACAAC AAAGAGTTTC TATAGCAAGG GCTTTGATGA ATGGTGGTGA GCTTATTTTA 
GCAGATGAGC CAACGGGTGC GCTTGATTCT AAAAGTGGAA AAATAGTTTT AGAAATTTTA 
AATAAACTCA ATGAGCAAGG ACACACCGTA GTTTTAGTCA CTCATGATAG AGAAATAGCT 
GCTAGAGCAA AAAGAGTTAT AGAAATTAAA GATGGTAAGA TTATAAGTGA TAATGGTGCA 
AAAAAAGCAG ATGAAATAAA AGCTAAGTTA ATGCCAAAAG AGAAAAAAAG CTTTAATTTG 
CTTAAAAATC AGCTTTTTGA AAGTTTAAAA ATGTCTGTAG CTTCCATCAT AGCACATAAG 
CTTCGTTCTT TGCTTACCAT GCTTGGTATT ATCATAGGTA TAGCTTCAGT AGTTTGCGTG 
GTTGCTTTAG GACTTGGAGC TCAACAAAAC ATACTTGCTT CTATTAGCTC TATTGGGACA 
AATACCATAG AAGTTGTTTC AGGGCGTGGC TTGGGAGATA TCCGATCAGG CAGAACAAGG 
CTGAATTTGA GTGATTTAAA AACCTTAAGC TCTTTGCCTT ATTTAGAAGC AGTAGAAGCA 
GATGTGGGTA AAATAGGGGT GGTAACTTAT AAGAATAATT CTTTGCAAGC TAGAATTTAT 
GGAGTAGGGC CAAATCATCT AAGACTTAGA GGTTTTGTGA TGGTAGATGG TAGATTTATT 
AACAATGAGG ATATAAAAGA TAATACTAAT ATTTGCATTA TAGATGAAAA TGCTTTAAGA 
ATTTTATTTG ATAATATCAG CGCTAAAGAT GTTTTAGGTA AAAGTGTGAT TTTTAATAAG 
CAACCTTTAA CTATAGTTGG TGTTTTAAAA AAAGAAAGAG ATAACAAAGG CTTTAGAGCT 
GATGAAAATA CCATTAAAAT TTATACCCCT TATACTACTT TAATGAATAA AATCACAGGA 
GATAAGCAAA TAAGAGCCAT AGTAACTAAG GTAAAAGATG AGGTAAATCC TACTTTAGCT 
GAAGAGGCTA TGGTAAAAAT TTTAGAGATT AAACGCGGAA AAAAAGATTT TTTCACCATA 
AATTCAGACG CAATTAAAAA TGCTATTGAG GAAAATACTG CTACTTTGAC TTTACTCATT 
TCATCTATTG CGGTGGTATC TTTGATAGTA GGTGGTATTG GTGTGATGAA TATCATGCTT 
GTTTCAGTAA GTGAGCGCAC AAGAGAAATT GGAGTTAGAA TGGCTATTGG AGCTAGAAAA 
GAAGATATTT TAATGCAGTT TTTAATCGAA GCTGTGTTGA TTTGCTCTTT AGGGGCCATT 
TTTGGAGTAA TGCTTTCTTT TATCATCATT GAAGTATTTA ATTCTTTAAA TTTTGGTTTT 
ACGATGATAC TTTCGTTAAA TTCAGTATTT TTAGGGCTTT TAAGTTCGGT TTTAATAGGA 
GTGGTTTTTG GATTTTTCCC AGCAAAAAAT GCAGCAAATT TAAATCCTAT TAGTGCTTTA 
TCAAAGGAAT GA 

 

Protein sequence

MIRLENIQKK INNTTILENI NLYIQKGEFV AIIGQSGSGK TSLLNIIGTL DEPSSGKYFL 
DAYEVTNLNK DEKARIRREK IGFIFQRYNL LSLLNAKDNV ALPAVYAGKN KHERSQKAKE 
LLSFLELDHK ELSKPNELSG GQQQRVSIAR ALMNGGELIL ADEPTGALDS KSGKIVLEIL 
NKLNEQGHTV VLVTHDREIA ARAKRVIEIK DGKIISDNGA KKADEIKAKL MPKEKKSFNL 
LKNQLFESLK MSVASIIAHK LRSLLTMLGI IIGIASVVCV VALGLGAQQN ILASISSIGT 
NTIEVVSGRG LGDIRSGRTR LNLSDLKTLS SLPYLEAVEA DVGKIGVVTY KNNSLQARIY 
GVGPNHLRLR GFVMVDGRFI NNEDIKDNTN ICIIDENALR ILFDNISAKD VLGKSVIFNK 
QPLTIVGVLK KERDNKGFRA DENTIKIYTP YTTLMNKITG DKQIRAIVTK VKDEVNPTLA 
EEAMVKILEI KRGKKDFFTI NSDAIKNAIE ENTATLTLLI SSIAVVSLIV GGIGVMNIML 
VSVSERTREI GVRMAIGARK EDILMQFLIE AVLICSLGAI FGVMLSFIII EVFNSLNFGF 
TMILSLNSVF LGLLSSVLIG VVFGFFPAKN AANLNPISAL SKE