Gene Cla_0673 details

Gene Information

• Locus tag: Cla_0673
• Symbol: ligA
• ID: 7410007
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 644923
• End bp: 646878
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 643717804
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_002575253
• Protein GI: 222823679
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTATC AAGAGTATTT AGAAAAGGTA AAATTAGCAA AAGAATGGAT GAGGGCTTAT 
TATGAAGATG ATGAGCCATT AGCAAGTGAT GAAGAATATG ATAAATTAAT TAGAGAATTA 
AAAGAATTTG AAGCACTTTA TAAGGATAAA ATTTCTAAAG ATTCTCCCAC ACAAAACATC 
GCTCCAACTA TACAAAGTGA ATTTCATAAA ATCACTCATA GTGCAAAAAT GTGGTCTATG 
GAAGATGTGT TTGATGAGGC TGAGCTTAGA GCTTGGGCAA AAAGAGCAAA ATGTGAGTTT 
GATTTTTTTA TAGAACCTAA ATTTGATGGA GCTAGTTTAA ATCTTACTTA TGAAAATGGT 
AAATTAATCA GTGGTGCTAC AAGGGGAGAT GGTGAAATAG GCGAGGATAT TACTTTAAAT 
GTTAAAGAAA TTTCTAATAT TCCTAAAATC ATACCTTATA AAGACAAGAT AGAAATTCGT 
GGTGAGGTGG TGATTTTAAA AGAAGATTTT GAAAAGATCA ACGAAAAAAG AGCCAAAGAT 
GGTTTAAGTT TATTTGCCAA TCCGCGTAAT GGGGCAAGTG GATCTTTAAG ACAGCTTGAT 
ACAAGTATCA CTAAAGAAAG AAATTTGAAA TTTTACCCTT GGGGAGTTGG AGAAAATTCT 
TTAAAATTTA GCAAACACTC TGAAGTGATG GAATTTATAA GAAGTCTTGG TTTTTTAAAA 
GATGATTTTG TATATTGTGT GAAAACTTTA GATGAGGTTT TAGAAAAATA CCACGAACTT 
TTAGAAAAAA GAGATCAAAA GCCTATGATG ATGGATGGTA TGGTTGTAAG GGTTGATGAT 
TTAAAAAAAT GTCAAGAGCT TGGATACACG GTTAAATTTC CAAAATTTAT GGCTGCGTTT 
AAATTTCCAG CTTTAGAAAA AACTACAACC TTACTTGGAG TAAATTTACA AGTTGGAAGA 
AGTGGGGTGA TAACTCCTGT TGCAATCTTA GAGCCCGTGG AATTAGACGG GGTTGTAGTA 
AAATCAGCTA CTTTGCATAA TTTTGATGAG ATAACAAGAC TTGGAGTGAT GATAGGTGAT 
AGTGTAAGCG TGATAAGAAG TGGTGATGTA ATACCTAAAA TCACTAAAGT TTTTACCCAA 
AGAAGAGATG GTTTAGAAAG CAAAATCACT AAACCAAGCC TTTGCCCTGA GTGTTTAAGT 
GAGCTTTTAG ATGAGGGTGC TTTTTTAAAA TGTCAAAATT TAGATTGTAA AGCAAGACTT 
GTAAATTCCA TTATATATTT TGTATCTAAG AAATGTTTAA ATATAGATGG CCTTGGAGAA 
AATATCGTAG AACTTTTATT TAAAGAAGGA AAAATCACAA ATATAGAAAG CATATTTTTC 
TTAAAATATG ATGATTTTTT AAATTTAGAA GGTTTTAAAG AAAAGAAAAT TAATAATCTT 
TTAAACGCTA TAGAAAATGC TAAAAAATGC TCTTTATCAA GATTTATCAC AGCTTTGGGT 
ATAGAGCATA TTGGCGAAGT AGCGGCTAAA AAGCTAGCAC AATCTTTTGG ATTTGATTGG 
TTTTTACAAA GTTATGAAGC TTATGTGAAT TTAGAGGGTT TTGGCGAGCA AATGGCAAAA 
AGTTTGCAAG AATTTACAAA AATAAATCAT CAACGCATTA AACATTTTTA TGAAATTTTG 
CACTTAGAAG ATGAAAAAAA AGAGCTTGCT TTAAATGAAA ATATTTCTAA TAAAACCTTT 
GTTATCACAG GTACTTTAAG CAAATCGCGT GATCATTTTA AAGAATTAAT CGAAAGTTTT 
GGAGCAAAGG TAAGCTCATC TGTATCTAAA AAAACTGATT TTGTATTATA TGGAAGCGAG 
GCAGGCTCAA AGCTTGAAAA AGCTCAAAGT TTGGGAGTTA AATGTATCAA TGAAGATGAA 
TTTAACGCAC TTTTAGGCGG TGATGATGAG GTATGA 

 

Protein sequence

MTYQEYLEKV KLAKEWMRAY YEDDEPLASD EEYDKLIREL KEFEALYKDK ISKDSPTQNI 
APTIQSEFHK ITHSAKMWSM EDVFDEAELR AWAKRAKCEF DFFIEPKFDG ASLNLTYENG 
KLISGATRGD GEIGEDITLN VKEISNIPKI IPYKDKIEIR GEVVILKEDF EKINEKRAKD 
GLSLFANPRN GASGSLRQLD TSITKERNLK FYPWGVGENS LKFSKHSEVM EFIRSLGFLK 
DDFVYCVKTL DEVLEKYHEL LEKRDQKPMM MDGMVVRVDD LKKCQELGYT VKFPKFMAAF 
KFPALEKTTT LLGVNLQVGR SGVITPVAIL EPVELDGVVV KSATLHNFDE ITRLGVMIGD 
SVSVIRSGDV IPKITKVFTQ RRDGLESKIT KPSLCPECLS ELLDEGAFLK CQNLDCKARL 
VNSIIYFVSK KCLNIDGLGE NIVELLFKEG KITNIESIFF LKYDDFLNLE GFKEKKINNL 
LNAIENAKKC SLSRFITALG IEHIGEVAAK KLAQSFGFDW FLQSYEAYVN LEGFGEQMAK 
SLQEFTKINH QRIKHFYEIL HLEDEKKELA LNENISNKTF VITGTLSKSR DHFKELIESF 
GAKVSSSVSK KTDFVLYGSE AGSKLEKAQS LGVKCINEDE FNALLGGDDE V