| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0390 |
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| Symbol | ctsD |
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| ID | 7410298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | + |
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| Start bp | 367573 |
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| End bp | 368964 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 643717521 |
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| Product | putative type II protein secretion system D protein CtsD |
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| Protein accession | YP_002574999 |
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| Protein GI | 222823425 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATATTTTT ATTCATTAGT ATTTTAAGTT TTACAAATAT TTTTGCTTCG
CAGTGTCATC AGCGCTTTTT TGATATAAGC GTAGAAAATA AAACTTCTTT GATTGAAATT
TTAAATGAAC TTGGTAGAGA ATGTGGATTT AGTATTATAA TAAAAGATTC ATTAGCTAGA
GAAAAGTTAA ATCATACTCA AAATTATTTA CACATAAGAA AAATGTCTTT AAGAGAAATT
TTTAAACTTT TATTGATGGA AAATAATCTT GCTTATGAGT ATGAAAAAAA TATTTTAAAA
ATTTATGGAA GACAAGTTAA AACTTTTAAA GTTCATTATA TAAGCTCTAT TAGAGAAGGG
CAAAGCATTA CTAAAGCTTC AGTGGATTCA AGACCTAAAC AGGGTGATTA TGATAGTGCT
AAAGAAGCAG ATAATTTAGT CATTAGTACA GATAAATTTG ATTTTTGGGA GAAAATTGCA
GAAGAAATTC AAGCTTTACT TGATGAAAAT ACTACTAAGC CCATTATTAA TACCAATGCG
GGAATTATTA CTTTAAATGC TACTTTGTAT GAGCTTGCAA GAGTTGAAAA ATATCTAAAA
GACTTAAATA AAAGACTTAA AAAGCAAGTT TTAATTGATG TAAGTATAGT TGCAGTACAT
TTAAATAAAA GCCATTCAAG TGGGATTAAC TGGCAAGATC TTGCTTTTAA ACTTAATGGA
GATGATAATG ATTTTATAAT CAATAAAGGT GGTGTTAAAA ATATTAATCT TAAAGCTAAT
GTTGAAACTA AGGCAATTTT AAATTTATTA CAAGAAAATG GCAAAACCAC TGTACTTTCT
AACCCAAAAC TCATGGCACT TAATAATCAG CAAGCTATTA TTTCCATAGG TGATACGATT
AATTATCAAG TAAAAGAAAG CTCTAAGGGT ACTGAAAATG GTACGACCAT TAGTGAAACT
TATAATAATT ATTCTATTTT TGTAGGAATT TTACTAAATA TTTTGCCAGA AATTTCAGAT
GATCATAAAA TCATGCTTAG GATTAATCCT AGTTTGAGTG ATTTTAAATA TAGTGTTGAT
AATCATAGAC AAAATAAACC AAGAAATATA GCACCAGATA CTATACAAAA AAAGCTTTCT
ACTGTAGTTG AAGTCGATGA TGGGCAAACT TTAATTTTGG GTGGATTGAT TAGCAAAAAT
ACGATTAGTA ATCATAATGA AGTAAGTGCT TTATCTAAAA TACCACTTTT TGGTGCCTTG
TTTCAAGGAA AGCAAAATTT AGAAGATATT AGTGAAATAG TTTTTATCAT CAAGCCAAGT
TTAATAAGAG CTGATAAAAA AGTATTAAGT TTGAAAGAAT TAGGTTTTGA ACATGAAGAT
GATATGTTTT AA
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| Protein sequence | MKKIIFLFIS ILSFTNIFAS QCHQRFFDIS VENKTSLIEI LNELGRECGF SIIIKDSLAR
EKLNHTQNYL HIRKMSLREI FKLLLMENNL AYEYEKNILK IYGRQVKTFK VHYISSIREG
QSITKASVDS RPKQGDYDSA KEADNLVIST DKFDFWEKIA EEIQALLDEN TTKPIINTNA
GIITLNATLY ELARVEKYLK DLNKRLKKQV LIDVSIVAVH LNKSHSSGIN WQDLAFKLNG
DDNDFIINKG GVKNINLKAN VETKAILNLL QENGKTTVLS NPKLMALNNQ QAIISIGDTI
NYQVKESSKG TENGTTISET YNNYSIFVGI LLNILPEISD DHKIMLRINP SLSDFKYSVD
NHRQNKPRNI APDTIQKKLS TVVEVDDGQT LILGGLISKN TISNHNEVSA LSKIPLFGAL
FQGKQNLEDI SEIVFIIKPS LIRADKKVLS LKELGFEHED DMF
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