| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0387 |
|---|
| Symbol | |
|---|
| ID | 7410295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 362958 |
|---|
| End bp | 363602 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 643717518 |
|---|
| Product | conserved hypothetical protein, putative HAD superfamily hydrolase |
|---|
| Protein accession | YP_002574996 |
|---|
| Protein GI | 222823422 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 0.322414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTAAAAA AGACTATTTT ATTTGACTTA GATGGCACTT TGATAGATTC TACAAGTGCC
ATTTTAGATG GATTTGATGC TGCTTTTAAA GCTTTTGGCG AGCCTTTAAG AGATCATGAA
ATAATTAAAG CTTTAATAGG CTTTCCTTTG GATATAGCCT TTGAAAAACT AGGTGTATCA
AAAGAAAAAA TAAACGAATA TATAAACGCA TATAGAAGTG TGTATCAAAA AATTTATATA
GAACAAACTC ATTTGCTTGC TTTGGCTAAA GAAAGCGTAT ATGAGGCTAG TTTGTTTGCT
GATTTGGCTG TAGTTACTAC TAAAAGCTCT AAATTTTCAA AGCCTTTGCT TGATCATTTG
GGTATAGGAA AATATTTTAA GGTTATTATA GGCAGAGATG ATGTAACTCA CCCAAAACCA
AATGCTGAGC CTATTTTATT AGCCTTAGGA AAATTGTCTA AAAGTAAAGA AAATGCATTT
ATGATTGGAG ATACTCATTT AGATATCCAA GCAGCTTGTA ATGCAGGCAT TAATCCCATA
GCAGTGAGTA GTGGTTATGA AAGTAAGGAA AGTTTAGCTA AATTTAAAAT TCCACTTTTT
AAAAATACTC ATGAGGCAAT AGAACACATA AAAAATATCC GATAA
|
|---|
| Protein sequence | MLKKTILFDL DGTLIDSTSA ILDGFDAAFK AFGEPLRDHE IIKALIGFPL DIAFEKLGVS
KEKINEYINA YRSVYQKIYI EQTHLLALAK ESVYEASLFA DLAVVTTKSS KFSKPLLDHL
GIGKYFKVII GRDDVTHPKP NAEPILLALG KLSKSKENAF MIGDTHLDIQ AACNAGINPI
AVSSGYESKE SLAKFKIPLF KNTHEAIEHI KNIR
|
|---|
| |