Gene Cla_0094 details

Gene Information

• Locus tag: Cla_0094
• Symbol: rpsD
• ID: 7411326
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter lari RM2100
• Kingdom: Bacteria
• Replicon accession: NC_012039
• Strand: +
• Start bp: 79766
• End bp: 80392
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 643717230
• Product: 30S ribosomal protein S4
• Protein accession: YP_002574711
• Protein GI: 222823138
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 0.0810213
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATAGAGGACC AGTTGAAAAA TTAGAAAGAC GACTTGGCGT AAGTTTAGCA 
ATGAAGGGCG AGAGAAGATT AGCAGGTAAA AGCGCTTTAG ATAAACGTCC TTATGCACCA 
GGTCAGCATG GACAAAGAAA AGCAAAAATT AGTGAATACG GACTTCAATT AAGAGAAAAA 
CAAAAAGCTA AATTTATGTA TGGAGTTAGC GAAAAACAAT TTAGAAGATT ATTTGCTGAA 
GCTGCAAGAA AAGATGGCAA CACAGGTGCG CTTTTAATCC AGCTTTTAGA GCAAAGACTT 
GATAATGTTG TTTATAGAAT GGGCTTTGCG ACAACTCGCC GTTTTGCAAG ACAACTTGTA 
ACTCATGGAC ATATTTTAGT AAATGGTAAA AGAGTGGATA TTCCTAGTTA TAGAGTTGAA 
GCAGGTCAAA AAATCGAAGT GATTGAAAAA AGCAAAAACA ATCCACAAAT TTCAAGAGCG 
ATTGAACTTA CTGCTCAAAC TGGTATAGTT GCTTGGGTTG ATGTAGAAAA AGATAAAAGA 
TTTGGAATTT TTACAAGAAA ACCTGAAAGA GAAGAAGTTA TCATTCCAGT TGAGGAAAGA 
TATATCGTTG AGTTGTATTC TAAATAA 

 

Protein sequence

MARYRGPVEK LERRLGVSLA MKGERRLAGK SALDKRPYAP GQHGQRKAKI SEYGLQLREK 
QKAKFMYGVS EKQFRRLFAE AARKDGNTGA LLIQLLEQRL DNVVYRMGFA TTRRFARQLV 
THGHILVNGK RVDIPSYRVE AGQKIEVIEK SKNNPQISRA IELTAQTGIV AWVDVEKDKR 
FGIFTRKPER EEVIIPVEER YIVELYSK