Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cla_0026 |
Symbol | |
ID | 7410587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter lari RM2100 |
Kingdom | Bacteria |
Replicon accession | NC_012039 |
Strand | + |
Start bp | 27143 |
End bp | 29128 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 643717162 |
Product | conserved hypothetical integral membrane protein, putative oligopeptide transporter, OPT family |
Protein accession | YP_002574645 |
Protein GI | 222823072 |
COG category | [S] Function unknown |
COG ID | [COG1297] Predicted membrane protein |
TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily [TIGR00733] putative oligopeptide transporter, OPT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCATACAA AAAACTCACT ACCGGAGCTT ACGCTTAGGG GTATAATACT AGGAAGTATT TTAACGATTA TTTTTACCGC CTCAAATGTA TATTTGGGGC TTAAAGTTGG TCTTACTTTT TCTACTTCTA TCCCTGCTGT TGTGATTGCA ATGGCTGTTT TAAAAATCTT TAAAGACTCT AATATTTTAG AAAATAATAT GGTTCAAACT CAAGTTTCAG CCGCAGGTAC GCTTTCGGCT GTGATTTTTG TTATACCAGG TCTTTTTATG TGTGGATATT GGTTTGAATT TCCTTTATGG CTTACTTTTA TGCTCTGTCT TTGTGGGGGT GGATTGGGCG TGCTTTTTAC TATACCTTTG CGTAGAGCCA TGGTGGTAGA GAGTAAATTA GCTTATCCTG AAGGAAGAGC TGCTGCTGAA ATTTTAAAAG TAGCTAATAA AGATCAAGCT GATAAAAAAG GAAAAGTAGG CTTAAAAGAA ATCACACTTG GTGTGGCTTT TGCTTCTATA ATAAGTCTTT TTTCAAGCGG TTTTAAACTA CTTTCAAGTG GAAGTAGTTT TGCATTCATT TGGCAAAAAA TGACTTTTGG CTTTTCTATG GGTTATTCAG TGGCGCTTTT GGGCGCTGGA TATTTAGTGG GTATAGCTGG AGGTGTTGCA TTGCTTGCGG GTATGGTGCT TGCTTGGATG GTTTTTGTGC CATATTTTTC TGCTAAAGAA AGCTTTGATG CGAGTTTAAG TGCACTTGAT ATAGCTAATC AAATTTGGGC TCAAAAGGTG CGTTTAATAG GCACAGGAGC TATAGCTATA GCAGCATTAT GGACTTTAAT AGAACTTACA AAACCTGTAT ATGATGGCAT GAAAAATATG CTTAAAAAAA CCTCATTAAA TCTCTCACAA GATCCTAAAG ATATGGATTT ATCTTTAAAA GCTATGCTAG GTTTATTTGT ACTTATGTGT ATAGGTTTGT TTGTTTCATT TTATGCTTTT GTGGCTGATT CAAATTTAGC AAGTGGTTAT CAAATTCTTT TTGCCTTGGT AGGAACTTTA GTAGCTATTT TCATAGGCTT TTTTGTAGCT TCTGCTTGTG GGTATATGGC AGGTTTGGTG GGTTCATCAT CTTCTCCTAT TTCGGGTATA GGGCTTATTG GGATTATGAT TTCTTCTTTG ATTATTTTAC TTTTGGGATA TCAAGTAGAT TTATTTAGCG ATCCTTTAAT GTCTAAATTT GCCATCGCTT TTGCTATATT TACTACTAGT GTTATTTTAG CAACTGCTGC TATTTCTAAT GATAATTTAC AAGATTTAAA AACGGGATAT TTAGTGGGTG CAACTCCTTG GAAACAACAA GTTTCTTTGA TTATAGGTTG TGTATTTGGA GCTTTAGCTA TAGCTCCTGT TTTAAATTTA TTATACCAAG CTTATGGTTT TGTGGGTGCA ATGCCAAGAG AGGGAATGGA TGAGGCAAAT GCGCTTGCTG CACCGCAAGC AAATTTGATG AGTACCATAG CGCAAGGTAT TTTTAATGCT AATATTGATT GGAGTTATAT TATAGCGGGA GCCTTTGTGG GTGTTGGTAT AATTATCATC GATCGTTTAT TGAGAAAGAA AAATATGTCT TTACCACCTT TAGCTGTGGG CATAGGTATA TATTTACCAC CTGCTGTTAA TATGCCTTTG TTTATAGGTG GATTATTAGC GTATTTAATT AAAAAGCGTT TAGAGCAAAG ATATGCTAAA AATGCACATA AAAAAGAACT CATTCAAGAG CATGAGCAAA AAGGAACCTT ATTTGCCTCT GGTTTGATAG TAGGTGAGAG TTTATTTGGA GTGCTAATAG CTGGTTTAAC TGTGCTTTCT ATTAGTAGAG GTGGGGCTGA AGATCCACTT GCTATTGTAA CTTCATTTAA AGACGATGGG GTTATAGGTT TTGTAGTTTT TGTAGCGATT ATGCTAATTT TTGCAAGAAG AGTACTTAAA AAATGA
|
Protein sequence | MHTKNSLPEL TLRGIILGSI LTIIFTASNV YLGLKVGLTF STSIPAVVIA MAVLKIFKDS NILENNMVQT QVSAAGTLSA VIFVIPGLFM CGYWFEFPLW LTFMLCLCGG GLGVLFTIPL RRAMVVESKL AYPEGRAAAE ILKVANKDQA DKKGKVGLKE ITLGVAFASI ISLFSSGFKL LSSGSSFAFI WQKMTFGFSM GYSVALLGAG YLVGIAGGVA LLAGMVLAWM VFVPYFSAKE SFDASLSALD IANQIWAQKV RLIGTGAIAI AALWTLIELT KPVYDGMKNM LKKTSLNLSQ DPKDMDLSLK AMLGLFVLMC IGLFVSFYAF VADSNLASGY QILFALVGTL VAIFIGFFVA SACGYMAGLV GSSSSPISGI GLIGIMISSL IILLLGYQVD LFSDPLMSKF AIAFAIFTTS VILATAAISN DNLQDLKTGY LVGATPWKQQ VSLIIGCVFG ALAIAPVLNL LYQAYGFVGA MPREGMDEAN ALAAPQANLM STIAQGIFNA NIDWSYIIAG AFVGVGIIII DRLLRKKNMS LPPLAVGIGI YLPPAVNMPL FIGGLLAYLI KKRLEQRYAK NAHKKELIQE HEQKGTLFAS GLIVGESLFG VLIAGLTVLS ISRGGAEDPL AIVTSFKDDG VIGFVVFVAI MLIFARRVLK K
|
| |