Gene Hlac_3331 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_3331 
Symbol 
ID7402187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012030 
Strand- 
Start bp81837 
End bp82859 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content55% 
IMG OID643709883 
ProductCRISPR-associated protein, Csh2 family 
Protein accessionYP_002567449 
Protein GI222481213 
COG category[L] Replication, recombination and repair 
COG ID[COG3649] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02590] CRISPR-associated protein, Csh2 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACTCA ACCGATCCGA AATACTGTTC ATTTACGACG CACAGGACTG CAACCCGAAC 
GGCAACCCTA TCGGCGACAA CCGCCCCCGA CGCGATCCTG ACACCGGACA GGGAATCATT 
ACCGATGTCC GTCTCAAGCG GTATCTCCGC GACCAACTGC TCGACGACGG GTTCGATATT 
TACGTCAAAA AGCTCGATGG AGATGCACGG CCGCGTACAA CTCTCGCGTT GGATGTGCTC 
GAAGATATCG ACGACGTAGA CGACATCGAA GAGATCGAAG ACGTCGGTGA ACGATTCCTT 
GCGGCCGCCA CTGACGTTCG GTACTTCGGC GCAACGATGA GTTTCGAGTC AAGTGACGAT 
GAAGAGGACG AAAAACTCCG ACAAGCCCTC GGGAGTGCGC TTCCGAACCA GTATCAGGGG 
CCGGTTCAGT TCCTGCCAGC GAAATCGTTG AACGAGGTTG AAGACAACGA GGAGTACGAT 
TCTCTCACGA GCGTCATCTC TACGGGCGAT GGGAACCGGC AGGGTGGATT CGATCTCGAC 
GACAAGAGAA TCAAATACGG GATCTTTCCC TTCTGGGGGT TGGTCGACAA CCACGGCGCA 
GAGTCGACGA ATCTGTCCGA GACAGATGTC AAACGTCTCG ATTCGCTCTG CTGGCGTGCG 
TTGAAGAACC AGACGACATC CCGGTCAAAA CTGGGCCAAG AGCCACGGCT CTACGTTCGA 
CCGGAGTACA AACCTGATAA TTATCACATC GGTGGACTTC ACAACCATGT CACGCTGTCC 
GATGAAAACG ACAAACCGCT CCGTTCGATC AACGATGTCG TCTTGGATGT CTCGAATCTC 
GTTACGGCGT TGGATCGCGC CGAGGATCGG ATCGAGACCG TCCACGTCGT GGGAAGTGAC 
TATCTGACAC TGACAACCGG TGATAAGACG ATCCCGGCGA GCGAGTTCGG CGACCATCTC 
GAATCGGAAG GCCACTCAGT CCACCAGATC GACGTTCTCG AAGAGCGTGA TTTCGCGGAG 
TAA
 
Protein sequence
MTLNRSEILF IYDAQDCNPN GNPIGDNRPR RDPDTGQGII TDVRLKRYLR DQLLDDGFDI 
YVKKLDGDAR PRTTLALDVL EDIDDVDDIE EIEDVGERFL AAATDVRYFG ATMSFESSDD 
EEDEKLRQAL GSALPNQYQG PVQFLPAKSL NEVEDNEEYD SLTSVISTGD GNRQGGFDLD 
DKRIKYGIFP FWGLVDNHGA ESTNLSETDV KRLDSLCWRA LKNQTTSRSK LGQEPRLYVR 
PEYKPDNYHI GGLHNHVTLS DENDKPLRSI NDVVLDVSNL VTALDRAEDR IETVHVVGSD 
YLTLTTGDKT IPASEFGDHL ESEGHSVHQI DVLEERDFAE