| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1964 |
|---|
| Symbol | secD |
|---|
| ID | 7399916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 1962760 |
|---|
| End bp | 1964349 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643709035 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_002566612 |
|---|
| Protein GI | 222480375 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.94592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.207837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAC CCATCAAGAA CAACTGGCAA ATATTGCTCT TGGTCGTCGT CGTACTCGGC
GCGACGGTAG CGCTTTTCGC GCCGCAGTTC GGTCCCCAGA CCGCCCCGGG CGAGAACGTC
TCCGAGGCCC AACAGGGCAT CACGAACCTC CAGTACGGAC TCGATCTGGC GGGCGGGACG
CGAGTCCGCG CACCACTCGT CGGCTACACC GCCACCGAGG TCGACTTCGG CGGTGATCAA
CCGGATGACG TCGCTCGCGC AATCGCAGAC GAACTTGAGA ACGCCTCGGC AAGCGATATC
ACTGCGGTGC CTGCGGAGAG CGCGGTCGAT GTCACAGAGA CATCAGTCAC CGAAGCGCAG
TTCCGGGCGG CGATGGACGC CTCGGGATAC GCCTACGAGG ACGTTCGCTC CGGCGTGACT
CAGGAGACTC GCGATGTCGC ACAGCGGGTC ATCGAGGACA AGATCGACGA GACCGGGCTC
TCTGGCGGAA CGGTCCAGCA GGTCCAGTCG CTCACCGGCG AGTACTTCAT CCTCGTCGAG
GTGCCCGGAG AGAACCGAAG CAGCGTAACC AGCCTGCTCG AAGAACGCGG GACCGTCCAG
ATCGACATCG CGTACCCGAC CGAAAACGGG ACCGCTGTCG AAGAGGAGGT GCTGACGCAA
GACGACTTCG CGGAGCTTGG ATCGGCTGCC CAGAACGATC GGGGCACCGG CGCCTACGTG
CCGGTGACGG TCCGGAACAC CGCCCCGGAG GGCGAGCAGT CGCCCGCCCA TAGCTTCCAG
CAGGCGGTCG CGGACCGCGG GTTCGCCGCG GCGTACAACT CCAACCAGGA CCGGTGCGAC
TACAGCGAGA ACCCGGACGA CGTGAGCAAT CCGTGCCTCC TGCTCACCGT CGACGGCGAG
GTCGTCAACT CCTTCGGGAT GGACCCGGAC CTCGCGGACA GCATGGCGAG CGGCTCGTGG
GCCACCGATG GCGGCTTCCG GCTCACAACG GGTGAGTTCA GCGAGGCCGA GCGAATCGCC
ATCAATCTGC GTGCCGGCGC GCTCCCGGCC GACCTCGACA TCAGCGGACA GGGGACCTCG
CGGTCCATCT CGGCGGCACA GGGGGAGAAC TACAAGAACT ACTCGCTGGT GACCGGAATT
CTCGCGGTGT TCGCGGTTGC CGGCATGGTG TTCCTCCGCT ACCGCGAGCC CGCGGTGGCG
CTGCCGATGA TCGTCACGGC GCTCGCTGAG GTGTACGCGC TGCTCGGCTT CGCCGCGCTG
TTGAGCTACC CCGTCGAGTT GGCTGTGATC GCCGGCTTCA TCGCTGTCGT CGGGACGGGA
GTCGACGACC TCGTGATCAT CGCCGACGAG GTGATGAGCG AGGGCGAGGT CAACTCCCGA
AAGGTGTTCG ACTCCCGGTT CCGCCGCGCC TTCTGGGTGA TCGGCGCGGC CGCGGCGACC
ACGATCATCG CGATGTCACC CCTGATGGTG CTGTCACTCG GGGACCTGTC CGGGTTCGCG
ATCTTTACCA TCCTCGGGGT CCTGATCGGC GTGTTGATCA CCCGCCCCGC GTACGGTGAC
ATCTTGCGTC GCCTGCTGAC GGTCCGGTGA
|
|---|
| Protein sequence | MLEPIKNNWQ ILLLVVVVLG ATVALFAPQF GPQTAPGENV SEAQQGITNL QYGLDLAGGT
RVRAPLVGYT ATEVDFGGDQ PDDVARAIAD ELENASASDI TAVPAESAVD VTETSVTEAQ
FRAAMDASGY AYEDVRSGVT QETRDVAQRV IEDKIDETGL SGGTVQQVQS LTGEYFILVE
VPGENRSSVT SLLEERGTVQ IDIAYPTENG TAVEEEVLTQ DDFAELGSAA QNDRGTGAYV
PVTVRNTAPE GEQSPAHSFQ QAVADRGFAA AYNSNQDRCD YSENPDDVSN PCLLLTVDGE
VVNSFGMDPD LADSMASGSW ATDGGFRLTT GEFSEAERIA INLRAGALPA DLDISGQGTS
RSISAAQGEN YKNYSLVTGI LAVFAVAGMV FLRYREPAVA LPMIVTALAE VYALLGFAAL
LSYPVELAVI AGFIAVVGTG VDDLVIIADE VMSEGEVNSR KVFDSRFRRA FWVIGAAAAT
TIIAMSPLMV LSLGDLSGFA IFTILGVLIG VLITRPAYGD ILRRLLTVR
|
|---|
| |