Gene Hlac_1895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_1895 
Symbol 
ID7400089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp1896289 
End bp1897149 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content67% 
IMG OID643708966 
ProductMscS Mechanosensitive ion channel 
Protein accessionYP_002566543 
Protein GI222480306 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3264] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.461855 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTATCAC TACAGTTCGG CGGTGTCGGG TTGAGCGCGG CCCTGACGGG GATCCTGTTC 
TCCGTGGCGC TGTTCCTCGT CGGATTCGTC GGCGTGCTGC TGCTGGGGAA GTTCGTGTTC
GTACCGGCGG TCATGCGGGT ATTGGGGTCG CGCGGGTTCG ACGAGGCCGT TCGCAGTCTC
GGCTCGAGCG TGGCGAACGC CGTCGTGTGG GTGGCGGCGA TCGCCATCGG ATTCACGATG
GCCGGCTACA GCGCGTTCCT CTCGGCGTTC GCCGTCTTCG GCGGCGCCAT CGCGCTCGCC
GTCGGCTTCG CCGCACAGGA CCTGCTCGGG AACTTCGTCG CCGGGATCTT TATCCTGAAG
GACAAGCCGT TCGAGGTCGG CGACTGGATC GAGTGGGACG GGAACGCGGG CCGCGTCGAG
GACATCGACC TGCGGGTCTC TCGCGTCCGA ACCTTCGATA ACGAGCGGAT CACGGTGCCG
AACGGCGACC TCGCGAACAA CGCGGTCACG AATCCGGTCG CCTACGAGAC GCTTCGCCAG
AAGTTCGTGT TCGGCATCGG CTACGAGGAC GACATCGCCG AAGCCACCGA CATCATCGTC
GAGAAGGCCG AGGCGCACGC GGAGATCCTC GACGACCCCG CGCCCTCGGT TCGGGTGGTC
GAACTGGGCG ACTCCGCCGT AGGCCTGCAG TCGCGCTGGT GGATCGGCGA GCCCGGCCGG
GGGGACTTCG TCCGCGTGCG CTCCGAGTAC GTCACCGACG TGAAGGAGGC GTTCGACGAG
GCCGGCATCG ACATGCCGTA CGTCCACCGG CAGCTCACCG GTAGCGTCGA AGTCATCGAG
TCGGTCGCCG ACGACGAGTA A
 
Protein sequence
MLSLQFGGVG LSAALTGILF SVALFLVGFV GVLLLGKFVF VPAVMRVLGS RGFDEAVRSL 
GSSVANAVVW VAAIAIGFTM AGYSAFLSAF AVFGGAIALA VGFAAQDLLG NFVAGIFILK
DKPFEVGDWI EWDGNAGRVE DIDLRVSRVR TFDNERITVP NGDLANNAVT NPVAYETLRQ
KFVFGIGYED DIAEATDIIV EKAEAHAEIL DDPAPSVRVV ELGDSAVGLQ SRWWIGEPGR
GDFVRVRSEY VTDVKEAFDE AGIDMPYVHR QLTGSVEVIE SVADDE