Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hlac_1895 |
Symbol | |
ID | 7400089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorubrum lacusprofundi ATCC 49239 |
Kingdom | Archaea |
Replicon accession | NC_012029 |
Strand | + |
Start bp | 1896289 |
End bp | 1897149 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643708966 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002566543 |
Protein GI | 222480306 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.461855 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTATCAC TACAGTTCGG CGGTGTCGGG TTGAGCGCGG CCCTGACGGG GATCCTGTTC TCCGTGGCGC TGTTCCTCGT CGGATTCGTC GGCGTGCTGC TGCTGGGGAA GTTCGTGTTC GTACCGGCGG TCATGCGGGT ATTGGGGTCG CGCGGGTTCG ACGAGGCCGT TCGCAGTCTC GGCTCGAGCG TGGCGAACGC CGTCGTGTGG GTGGCGGCGA TCGCCATCGG ATTCACGATG GCCGGCTACA GCGCGTTCCT CTCGGCGTTC GCCGTCTTCG GCGGCGCCAT CGCGCTCGCC GTCGGCTTCG CCGCACAGGA CCTGCTCGGG AACTTCGTCG CCGGGATCTT TATCCTGAAG GACAAGCCGT TCGAGGTCGG CGACTGGATC GAGTGGGACG GGAACGCGGG CCGCGTCGAG GACATCGACC TGCGGGTCTC TCGCGTCCGA ACCTTCGATA ACGAGCGGAT CACGGTGCCG AACGGCGACC TCGCGAACAA CGCGGTCACG AATCCGGTCG CCTACGAGAC GCTTCGCCAG AAGTTCGTGT TCGGCATCGG CTACGAGGAC GACATCGCCG AAGCCACCGA CATCATCGTC GAGAAGGCCG AGGCGCACGC GGAGATCCTC GACGACCCCG CGCCCTCGGT TCGGGTGGTC GAACTGGGCG ACTCCGCCGT AGGCCTGCAG TCGCGCTGGT GGATCGGCGA GCCCGGCCGG GGGGACTTCG TCCGCGTGCG CTCCGAGTAC GTCACCGACG TGAAGGAGGC GTTCGACGAG GCCGGCATCG ACATGCCGTA CGTCCACCGG CAGCTCACCG GTAGCGTCGA AGTCATCGAG TCGGTCGCCG ACGACGAGTA A
|
Protein sequence | MLSLQFGGVG LSAALTGILF SVALFLVGFV GVLLLGKFVF VPAVMRVLGS RGFDEAVRSL GSSVANAVVW VAAIAIGFTM AGYSAFLSAF AVFGGAIALA VGFAAQDLLG NFVAGIFILK DKPFEVGDWI EWDGNAGRVE DIDLRVSRVR TFDNERITVP NGDLANNAVT NPVAYETLRQ KFVFGIGYED DIAEATDIIV EKAEAHAEIL DDPAPSVRVV ELGDSAVGLQ SRWWIGEPGR GDFVRVRSEY VTDVKEAFDE AGIDMPYVHR QLTGSVEVIE SVADDE
|
| |