Gene Hlac_0887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_0887 
SymbolileS 
ID7401258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp878566 
End bp881718 
Gene Length3153 bp 
Protein Length1050 aa 
Translation table11 
GC content67% 
IMG OID643707952 
Productisoleucyl-tRNA synthetase 
Protein accessionYP_002565555 
Protein GI222479318 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0060] Isoleucyl-tRNA synthetase 
TIGRFAM ID[TIGR00392] isoleucyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGATA TCGACGACCA GTACACGCCC GCGGACGTCG AGTCGGCGGT CGACGAGTAC 
TGGGACGAGA GCGACGCCTA CGATTCGGCG AAGGAGGCGC ACGCCGACGA CCCGCCCTTC
TTCTTCGTGG ACGGGCCGCC GTACACCTCC GGCCAGATGC ACCTCGGCAC GGCGTGGAAC
AAGACGCTGA AGGACGCGAT CATCCGCCAC AAGCGGATGA CCGGCCACCG CGTCACCGAC
CGCCCGGGCT ACGACATGCA CGGACTCCCG ATCGAGGTGA AAGTCGAGGA GGAACTCGGC
TTCGAGAACA AGCGGGACAT CGAGGAGTAC GGCATGGAAT CGTTCATCGA GAAGTGCAAA
GAGTTCGCCC TACGCAATCG GGCGGCGATG GACGAGGACT TCCAGTCGAT CGGCGTGTGG
ATGGACTGGG ACGACCCCTA CGAGACGATC GATCCCGAGT ACATGGAGGC CGCGTGGTGG
GCGTTCTCGA ACGTCGCCGA TAACGGGCTC GTCGAGCAGG GGAAGCGCTC CATCTCGCAA
TGCCCGCGCT GTGAGACCGG ACTCGCCAAC AACGAGGTCG AATACGAGGA CGTTGAGGAC
CCCTCCATCT ACGTGAAGTT CCCGCTCGCC GACCGCGAGG GAAGTCTCGT CATCTGGACG
ACGACGCCGT GGACCATTCC CGCGAACACC TTCGTCGCCG TCGACGAGGA CCTCACCTAC
AACGCGGTCC GCGCCGAGAG GGACGGCGAG AGCGAACTCA TCTACGTCGC CGCCGACTGC
GTCGAGGACG TGCTCCAGGA GGGTCGCTAC GAGGAGTACG AGGTCGAAGC CGAGCTGTCG
GGCGCAGAGC TCGTCGGCTG GGCGTACGAC CACCCGCTCG CCGACCACGT CGCCGAATAC
CCGAACTTCG AAGGCGCCGG GCAGGTGTAC GCCGCCGACT ACGTCGAGGC CGACCGCACC
GGACTCGTCC ATTCCGCGCC GGGACACGGG GAGGAGGACT TCCACCGCGG TAGCGAGTTG
GGCCTCGACA TCTACTGTCC GGTCGGTCCC AACGGCGAAT TCACCGAGGC CGCCGGGGAG
TACGCGGGCG AGTTCGTCCG CGACGCCAAC GACGACATCG TCGACGACCT GGTCGCCGAC
GGCCACATGC TCGCGCACGG CACAGTGAAC CACAGCTACG GGCACTGCTG GCGGTGTGAC
ACCGGCATCA TCCAGCTGGT CACCGACCAG TGGTTCATCT CGATCACGGA CGTGAAGGAG
GACCTCCTCG ACAACATGGA GCAGTCCGAG TGGCACCCGC AGTGGGCGCG GGACAACCGG
TTCCGCGACT TCATCGAGGA CGCGCCCGAC TGGAACGTCT CCCGCCAGCG CTACTGGGGG
ATCCCGATCC CGATTTGGGT GCCGGAGGAC GCCGAGGCCG GGAACCTCGA CGACGATATG
ATCGTGATCG GCACCCGCGA GGAGCTCGGC GAGCGCGTCG AGGAGGACAT CGACCCCAAG
ACGATCGACC TTCATCGCCC CGCCGTCGAC GACCTGACGG TCGTCGAGGA CGGGACCACC
TACCGCCGAG TCGAGGACGT GTTCGACGTG TGGCTCGACT CCTCAGTGGC CTCGTGGGGC
ACGCTCGGGT ACCCGAGCGA TGAGACCGCC CACGACGAGC TGTGGCCCGC CGACTTCATC
GTCGAGGCGC ACGACCAGAC CCGCGGCTGG TTCTGGTCGC AGCTCGGGAT GGGAACCGCC
GCAGTCGGAG AAATTCCCTA CGAAGAGGTC CTCATGCACG GGTTCGCCAA CGACGAGAAC
GGCCGAAAGA TGTCCAAGTC TGTCGGTAAC ATCGTCACGC CCGAGGAGGC GATCGAGCGC
GCCGGCCGCG ACCCGCTCCG CACCTACCTG CTCAGCCACG ACCAACAGGG AGTCGACCTC
GCGTTCGAAT GGGACGGACT CGGTGAGTTG CAGGGGAAGC TCAACATTCT CTGGAACGTC
TTCCGATTCC CGCTAGAGTA TATGGATCTC GACGGCTACG ACCCCGCCGA GGCCGACCTC
GATGACGGCG AACTCGAACT CGTCGACGAG TGGGTGCTCT CCCGGCTCCA GTCCGTCGAG
ACGGAGGTGA CGGAGGCGTG GGCCGACTAC CGCGTCAGCG ACGCCGTCAA CGCCGTGATC
GAGTTCGTTA CGCAGGACGT GTCGCGCTTC TACGTGAAGG CGGTCCGCGA CCGCATGTGG
GAGGAGGCCG ACTCCGCCTC CAAGCGCGGC GCCTACGCGA CGCTCGCGAC CGCCCTCGAC
GAGACGACCC GGCTGCTCGC GCCGATCGCG CCGTACATGA CCGAGCGCAT GTACCAGACG
CTCGACGGTG AGGCCACGAC CGTCCACCAG CTCGACTACC CGGAGCCCGA CGAGGATCTC
CACGATCCCG AGCTTGAGCG TGACGTGGCC GTCCTCCGCG ACGTGGAGGA GGCCGCCGCG
AACGCCCGTC AGCAGGCCGG TCGCAAGCTC CGCTGGCCCG TGCCGCGCGT GGTCGTCGAG
AGCGACGACG AGAACGTGAT CGCCGCGGTC GAGCGGCTCT CGGATCTGAT CGCCGACCGC
GTCAACGCCC GCGAAGTGAC CGTCACCGAC GCCTTCGACG AGTTAGTCGA GACCGCCGAG
CCGCAGATGG GTGCGATTGG TCCCGCCTTC GGCGCCGACG CCCAGAAGGT GATGAACGCG
GTGCAGGGCG CGACCCGCGC GGCGGTCGAG GGCGGCGAGG TGACCGTCGA CGGCGATCCG
GTCGACCTCG CCGACGAGAT GGTCGAGTAC GTCGCGGAGC CGCCGGAACA CGTCTCCGGT
GCCGACTTCG ACGGCGGCGC CGTCTACGTC GATACCTCCC TGACCCCGGA GATCGAATCG
GAGGGCTACG CCCGCGACGT GATCCGCCGG ATTCAGGAGA TGCGCAAGGA GCTCGATCTG
GACGTGGAGG CCCGGATCCG CGTCGGCGTC ACGGTCGACG ACGATCGGGT GGCCGACTTC
GTCGACGAGC ACGCCGACCT GATCGCCGGC GAGGTGCGCG CCGACGCGTG GATCGACGAC
CCGAGCGACG CCGCGGACGC CGAGGGCGGT CTCGTCGAGG AGTGGGAGGT CGAAGGTGTC
GCGGTCACGA TCGGAATCGA ACCGGTCGCG TGA
 
Protein sequence
MDDIDDQYTP ADVESAVDEY WDESDAYDSA KEAHADDPPF FFVDGPPYTS GQMHLGTAWN 
KTLKDAIIRH KRMTGHRVTD RPGYDMHGLP IEVKVEEELG FENKRDIEEY GMESFIEKCK
EFALRNRAAM DEDFQSIGVW MDWDDPYETI DPEYMEAAWW AFSNVADNGL VEQGKRSISQ
CPRCETGLAN NEVEYEDVED PSIYVKFPLA DREGSLVIWT TTPWTIPANT FVAVDEDLTY
NAVRAERDGE SELIYVAADC VEDVLQEGRY EEYEVEAELS GAELVGWAYD HPLADHVAEY
PNFEGAGQVY AADYVEADRT GLVHSAPGHG EEDFHRGSEL GLDIYCPVGP NGEFTEAAGE
YAGEFVRDAN DDIVDDLVAD GHMLAHGTVN HSYGHCWRCD TGIIQLVTDQ WFISITDVKE
DLLDNMEQSE WHPQWARDNR FRDFIEDAPD WNVSRQRYWG IPIPIWVPED AEAGNLDDDM
IVIGTREELG ERVEEDIDPK TIDLHRPAVD DLTVVEDGTT YRRVEDVFDV WLDSSVASWG
TLGYPSDETA HDELWPADFI VEAHDQTRGW FWSQLGMGTA AVGEIPYEEV LMHGFANDEN
GRKMSKSVGN IVTPEEAIER AGRDPLRTYL LSHDQQGVDL AFEWDGLGEL QGKLNILWNV
FRFPLEYMDL DGYDPAEADL DDGELELVDE WVLSRLQSVE TEVTEAWADY RVSDAVNAVI
EFVTQDVSRF YVKAVRDRMW EEADSASKRG AYATLATALD ETTRLLAPIA PYMTERMYQT
LDGEATTVHQ LDYPEPDEDL HDPELERDVA VLRDVEEAAA NARQQAGRKL RWPVPRVVVE
SDDENVIAAV ERLSDLIADR VNAREVTVTD AFDELVETAE PQMGAIGPAF GADAQKVMNA
VQGATRAAVE GGEVTVDGDP VDLADEMVEY VAEPPEHVSG ADFDGGAVYV DTSLTPEIES
EGYARDVIRR IQEMRKELDL DVEARIRVGV TVDDDRVADF VDEHADLIAG EVRADAWIDD
PSDAADAEGG LVEEWEVEGV AVTIGIEPVA