Gene Hlac_0293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_0293 
Symbol 
ID7401219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012029 
Strand
Start bp316723 
End bp318507 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content69% 
IMG OID643707356 
Productglycyl-tRNA synthetase 
Protein accessionYP_002564968 
Protein GI222478731 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0423] Glycyl-tRNA synthetase (class II) 
TIGRFAM ID[TIGR00389] glycyl-tRNA synthetase, dimeric type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0367979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.30338 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTCCG AGGAGATCGG CGAGCTGGCG AAGCGGCGCG GGTTCTTCTT CGGCTCGAAC 
GGTGCGTACG GCGGCACCGC CGGATTCTAC ACCTTCGGTC CGCAGGGCGC GGCGCTGAAG
AAGAACGTCG AGGACGCGTG GCGCGACCGG TTCACCATCC GAGAGGGGAA CCGCGAGATC
GAGGCCCCGA CGATCATGCC GGAAGCCGTC TTCGAGGCGT CCGGCCACCT AGAGGGGTTC
GACGACATGC TCGTCGAGTG TCCCGAGTGC GGCGAGTCCC ACCGCGCCGA CCACCTCGTC
GAGGCGGTCA CAGAGATCGA GGACGCCGAG GCGCTGCCCG GGTCGGAAGT CGAGGAGCTC
ATCGCCGACA ACGACATCGC CTGCCCGTCC TGTGGCACCC CGCTTGCGGG CGTGACGGTC
GAGGACTTCA ACCTCATGTT CGCGACCGAC ATCGGTCCCG GCGACGGCCA GCCCGGCTAC
CTGCGGCCGG AGACGGCACA AGGTATCTTC GTGGAGTTCC CGCGGCTGAA GGAGTACGCC
CGCGGGAACC TCCCGTTCGG GATCACCCAG ATCGGTCCGG CCTACCGCAA CGAGATCTCG
CCGCGCGGCG GGCTCCTCCG GCTGCGTGAG TTCACGCAGG CGGAACTGGA GCAGTTCATC
GACCCCGAAG AGGACGAGCC GCCGCTGGAC CGCGTGCGCG ACGTGTCGGT CCGGCTGTAC
CCCGCGACCG AACAGCAGGC CGAGGACGGC GAGTACGTCG AGACCACGAT CGGCGAGGCG
GTCGACGAGG AGATCATCGG CTCCCCGTGG GTCGGCTACT ACCTCGGCGT CGCGAAGGAG
TGGTACGACC GGATCGGCGT CGACCTCGAC CGCTTCCGGT TCCGCCAGCA CCTCGCGGGC
GAGCGCGCCC ACTACGCGTC CGACTGCTGG GATGCGGAGA GCGAAGTCGA CGGCGACTGG
ATCGAGATCG CGGGCTTCTC GTACCGCGCC GACTACGACC TCTCGAAACA CGACGAGTAC
GGCGACGACG CGTTCACCGT GTTCAAGCGC TACGACGAGC CGAAGACGGT CGAGCGCGCA
ACCGTCGACC CCGACATGTC CGTGCTCGGC CCCGAATTCG GCGGGGACGC CGCCGCGGTC
GCCGAGGCCC TCGAAACCCT CGCCGAGCGC GATCCCGACG CGTTCGACAG CGAGACGGTG
TCGGTCGAGG TGAACGGCGA CGACCAGACC GTCGACACCG ACGTGGCGAA CTTCTCGGTC
GAGACGGTGA CCGAGAACGG CGAGCACCTC ACGCCGCACG TCGTCGAACC GTCCTTCGGC
GTGGGCCGGA CAGTCCAGAC CCTGCTGGCG CACGCCTACA GCGAGGACGA GGTCGACGGC
GAGGAGCGAA CGTACCTCTC CTTAGAGCCC GAGGTCGCGC CGCAGGACGC CGCCGTCTTC
CCGCTCGTGA CCAACGACGA CCGGCTCACC GAGCTGGCCG ACCGCGTCGC AGCCGACCTC
CGCGAGGCGG GGGTGGCGGT CGCGTACGAC GACTCCGGCT CGATCGGGCG GCGCTATCGC
CGCCAAGACG AGATCGGGAC TCCGTTCTGC GTCACGATCG ACCGCGACGG GATCGAGGGC
GACGGCCCAG AGACGGTGAC CGTCCGCGAG CGCGACTCCG CGGTGCAGGT CCGGGTCCCG
GCCGAAGAGC TGGCCACGGA GCTGACCGCG CTCCGCACCG GCGGCGAGTT CGACGCGCTG
GTGGACCGTT ACGAGACAGT CGCGACCGAC GTCGAGACCA ACTGA
 
Protein sequence
MASEEIGELA KRRGFFFGSN GAYGGTAGFY TFGPQGAALK KNVEDAWRDR FTIREGNREI 
EAPTIMPEAV FEASGHLEGF DDMLVECPEC GESHRADHLV EAVTEIEDAE ALPGSEVEEL
IADNDIACPS CGTPLAGVTV EDFNLMFATD IGPGDGQPGY LRPETAQGIF VEFPRLKEYA
RGNLPFGITQ IGPAYRNEIS PRGGLLRLRE FTQAELEQFI DPEEDEPPLD RVRDVSVRLY
PATEQQAEDG EYVETTIGEA VDEEIIGSPW VGYYLGVAKE WYDRIGVDLD RFRFRQHLAG
ERAHYASDCW DAESEVDGDW IEIAGFSYRA DYDLSKHDEY GDDAFTVFKR YDEPKTVERA
TVDPDMSVLG PEFGGDAAAV AEALETLAER DPDAFDSETV SVEVNGDDQT VDTDVANFSV
ETVTENGEHL TPHVVEPSFG VGRTVQTLLA HAYSEDEVDG EERTYLSLEP EVAPQDAAVF
PLVTNDDRLT ELADRVAADL REAGVAVAYD DSGSIGRRYR RQDEIGTPFC VTIDRDGIEG
DGPETVTVRE RDSAVQVRVP AEELATELTA LRTGGEFDAL VDRYETVATD VETN