| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0056 |
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| Symbol | |
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| ID | 7401411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorubrum lacusprofundi ATCC 49239 |
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| Kingdom | Archaea |
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| Replicon accession | NC_012029 |
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| Strand | - |
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| Start bp | 56851 |
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| End bp | 58905 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643707117 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_002564732 |
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| Protein GI | 222478495 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1202] Superfamily II helicase, archaea-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000344856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGTCACAGC AGTTGGCCGA AGTCGAGACG CTGTTCCTCC ACGAGGCGCG GAGCGACTAC
ACCGTTGTCG CCACCCGCGA CGGCAATCGG ATACTCCGCG GGCGGCTCGA ACTCAAGGAG
ACCTCCGCAG GCCCGCGACC GGGCAAGTTC CGTGTCATCC GCGACGGCGA GGACCATCCC
CGCCAGCCCG GCGAATTCGT TGATCTCGCC CGCGCGGCCG GTCGGATTCG GATCTCCGAG
CAGACCTCGC CGAAGAACCG CAAGCGGCTG CAGGCGATGC TCGACGGCTA CCAGCTGGAG
GCGATGGCGG TCCGGACCTG TCGGCGTTGC GCGAACGACG GTCGGTATGG CCCCATCACG
AGCGACGGCG CAATCGAGCA CAACGACGAG CTGATCTGTC GCGACTGCGC CCGCCGGGAG
TTGGAACGCG AGCTGTCGTA CAAAGGCGAG TTCACGGGCG CCGCCGAGGA GCGGCTAGAG
GAGCTGCTGT ACGAGTCCGG GGATTTAGAC CGGATCGTCA ACCTCCTGCA AGGCGGACTC
GATCCCGATC TCACCAAGTA CGACGAGGTC TCCGCGAACG TCGACGATAT CTCCCCGGTC
CGGACCGAGG ACCTCGATCT CCATCCGGAT CTCTCTGCAC ATCTGCAGGG CCGCTTCGAG
GAGCTGCTCC CGGTCCAGAG CCTGTCCGTG CGGAACGGTC TCCTCGATGG TACCGACCAG
CTCGTCGTGA GCGCGACCGC GACCGGGAAG ACCCTCGTCG GCGAGCTAGC CGGAATCGAC
CGGGCACTGA AAGGGGACGG GAAGCTCCTC TTTTTAGTCC CTCTCGTCGC GCTCGCCAAC
CAGAAGCACG AGGACTTCAA AGACCGCTAC GGCGACCGGC TGAACGTCTC GATCCGCGTC
GGCTCCTCGC GGGTGAACGA CGACGGAAAC CGCTTCGACC CGAACGCCGA CGTGATCGTC
GGTACCTACG AGGGGATCGA CCACGCACTC CGGACCGGGA AGGACCTCGG TGACATCGGC
ACCGTCGTCA TCGACGAGGT CCACACGCTG AAGGAGGGCG AGCGCGGCCA CCGGCTCGAC
GGGCTCATCT CACGGCTGAA GTACTACAGC GAGAATCGGA TGGAGACCCA CGAGGGGTAC
GGCGGCACCC AGTTCGTCTA CCTCTCGGCG ACGGTGGGGA ACCCAGAATG GCTCGCCGAG
AAGCTCCGAG CCACGCTCAT CGAGTACGAG GAGCGACCCG TCCCCATCGA GCGCCACGTC
ACCTTCGCGG ACAGCCGCGA GAAGGCGCAG ATCGCCGACA AGCTCGTGAA GCGCGAGTTC
GACACGAAAT CCTCGAAGGG GTACCGGGGC CAGACGATCA TCTTCACGAA CTCCCGGCGA
CGATGTCACG AGATCAGCCG GAAGCTCCGG TACGACTCCG CGCCGTATCA CGCCGGACTC
GACTACAAGC GCCGGAAGAA AGTCGAACGG CAGTTCGGGA ACCAGGACCT CTCGGCGGTC
GTCACCACCG CGGCGCTGGC GGCCGGCGTC GACTTCCCCG CCTCGCAGGT GATCTTCGAC
TCGCTGGCGA TGGGGATCGA GTGGCTCTCC GTTCAGGAGT TCTCCCAGAT GCTCGGGCGC
GCCGGGCGGC CGGACTACCA CGACCGTGGC CGTGTCTACC TCCTCGTCGA GCCCGACGGC
GTTTACCACA ACTCCATGGA CCGGACCGAA GATGAGGTGG CGTTCACCCT CCTCAAGGGG
GAGATGGAGG ACGTGGCGAC CCACTACGAC GAGACCGCCG CCGTCGAGGA GACGCTGGCG
AACGTCGTCG TCGCGGGCAA GAAGGCCAAG CGGCTCAACG ATCGGATGAT CGGCGAGGTG
CCGACGAAAC ACGCGGTCGG AAAGTTACTG GAGTGGAAGT TCATCGACGG CTTCTCGCCG
ACGCCGCTCG GTCGCGGTAT CACGAGGCAC TTCCTCGCGC CCGACGAGGC GTTCTTCATG
CTCGACGCGA TCCGGAAGGG GACGGACCCG TACCAGATCG TCGCCGACCT CGAACTGCGC
GACGACGAGG AGTGA
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| Protein sequence | MSQQLAEVET LFLHEARSDY TVVATRDGNR ILRGRLELKE TSAGPRPGKF RVIRDGEDHP
RQPGEFVDLA RAAGRIRISE QTSPKNRKRL QAMLDGYQLE AMAVRTCRRC ANDGRYGPIT
SDGAIEHNDE LICRDCARRE LERELSYKGE FTGAAEERLE ELLYESGDLD RIVNLLQGGL
DPDLTKYDEV SANVDDISPV RTEDLDLHPD LSAHLQGRFE ELLPVQSLSV RNGLLDGTDQ
LVVSATATGK TLVGELAGID RALKGDGKLL FLVPLVALAN QKHEDFKDRY GDRLNVSIRV
GSSRVNDDGN RFDPNADVIV GTYEGIDHAL RTGKDLGDIG TVVIDEVHTL KEGERGHRLD
GLISRLKYYS ENRMETHEGY GGTQFVYLSA TVGNPEWLAE KLRATLIEYE ERPVPIERHV
TFADSREKAQ IADKLVKREF DTKSSKGYRG QTIIFTNSRR RCHEISRKLR YDSAPYHAGL
DYKRRKKVER QFGNQDLSAV VTTAALAAGV DFPASQVIFD SLAMGIEWLS VQEFSQMLGR
AGRPDYHDRG RVYLLVEPDG VYHNSMDRTE DEVAFTLLKG EMEDVATHYD ETAAVEETLA
NVVVAGKKAK RLNDRMIGEV PTKHAVGKLL EWKFIDGFSP TPLGRGITRH FLAPDEAFFM
LDAIRKGTDP YQIVADLELR DDEE
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