| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2909 |
|---|
| Symbol | |
|---|
| ID | 7384094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 3095149 |
|---|
| End bp | 3096210 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643656219 |
|---|
| Product | TIM-barrel protein, nifR3 family |
|---|
| Protein accession | YP_002554343 |
|---|
| Protein GI | 222112079 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCG GCCCCATTCC CTTGGCCAAC CGCCTGTTCG TCGCCCCCAT GGCGGGCGTG
ACGGACCGGC CGTTTCGCCA GCTGTGCAAG CGGCTGGGCG CGGGCTATGC GGTGAGTGAG
ATGGTGACCT CGCGCAAGGA CCTGTGGAAC AGCCTCAAGA CCAGCCGCCG CGCCAACCAC
GAGGGCGAGC CCGGCCCGAT CGCGGTGCAG ATCGCCGGCA CCGACGCGGC CATGATGGCC
GAGGCCGCGC TCTACAACAT CGACCGCGGT GCACAGATCA TCGACATCAA CATGGGCTGC
CCCGCCAAGA AGGTCTGCAA CAAGTGGGCG GGCTCTGCCC TGATGCAGAA CGAAGCCCTG
GCCGTGGAGA TCGCCGAGGC CGTGGTGGCC GCCTGCGCAC CGCGCGGCGT GCCGGTCACG
CTGAAGATGC GCACCGGCTG GTGCCAGCAG CACAAGAACG CCGTGGTGCT GGCGCGCCGC
TTCGAGGACG TGGGCATCCA GATGCTGACC GTGCACGGCC GCACGCGCGA GCAGGGGTAC
AAGGGCCAGG CGGAGTACGA CACCATCGCT GCCGTGAAGG CCGCAGTGCG CGTGCCCGTG
GTGGCCAATG GCGACATCAC GTCGCCCGAG AAAGCCCGGG CGGTGCTGGC CGCCACAGGC
GCCGACGCGG TCATGATCGG GCGCGCGGCC CAGGGCCGGC CGTGGATCTT CCGCGAGATC
GGCCACTACC TCGCCACTGG CGAGCACCTC GCGCCGCCGC TGGTGGCCGA GGTGCGTCGC
CTGCTGCTGG AGCACCTGCA GGACCACTAC GGCCTGTACG GCGAGGCCAG CGGCGTGCGC
AGCGCGCGCA AGCACATCGC CTGGTATGTG CGCGCGCTGC CGGGCGGCGA GGCACTGCGA
CAACACATCA ACACCATCGA GGACTGCGCG GCGCAGTGGC AGGCGGTGGC CGATTTCTTC
AGCGCGCTGG GCGCGCAGAT GGACCGGCTG CCGGCCGCAC ACGACGGCGC CGACGCGGTC
CCGCCCCTGA GGGAAACAGA GCATGAGCCG GAACAACATT GA
|
|---|
| Protein sequence | MQIGPIPLAN RLFVAPMAGV TDRPFRQLCK RLGAGYAVSE MVTSRKDLWN SLKTSRRANH
EGEPGPIAVQ IAGTDAAMMA EAALYNIDRG AQIIDINMGC PAKKVCNKWA GSALMQNEAL
AVEIAEAVVA ACAPRGVPVT LKMRTGWCQQ HKNAVVLARR FEDVGIQMLT VHGRTREQGY
KGQAEYDTIA AVKAAVRVPV VANGDITSPE KARAVLAATG ADAVMIGRAA QGRPWIFREI
GHYLATGEHL APPLVAEVRR LLLEHLQDHY GLYGEASGVR SARKHIAWYV RALPGGEALR
QHINTIEDCA AQWQAVADFF SALGAQMDRL PAAHDGADAV PPLRETEHEP EQH
|
|---|
| |