| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2775 |
|---|
| Symbol | ispH |
|---|
| ID | 7385543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 2954790 |
|---|
| End bp | 2955785 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643656084 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_002554209 |
|---|
| Protein GI | 222111945 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.393483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAC CCCAGGAAAT CGTTCTGGCC GAGCCGCGCG GATTTTGCGC GGGGGTGGAC
CGGGCCATCG AGATCGTCGA GCGCGCCATC GCCAAGTTCG GCGCGCCCAT CTACGTGCGC
CACGAGATCG TGCACAACAC CTACGTGGTG AACGACCTGA AGGCCAAGGG CGCGATCTTC
ATCGAGGACC TGGACGAGGT GCCGCCCGGC GCCACGCTGA TCTTCTCGGC CCACGGCGTG
AGCCGCGCTG TTCAGGACGA GGCGCGCGCG CGGGGTTTCA CCATCTTCGA CGCCACCTGT
CCGCTGGTGA CCAAGGTGCA TGTCGAGGTG GCCAAGCTGG CCAAGGAAGG CTACGAGTTC
ATCATGATCG GCCACAAGGG GCACCCCGAG GTCGAGGGCA CCATGGGCCA GTTGGACCAT
GGCATCCACT TGGTGGAAGA CGTGGCCGAC GTGGCCCGTG TGCAGCCCGC GCAGACCGAG
AAGCTGGCCG TGGTCACGCA GACCACGCTC AGCGTGGACG ACGCGGCCGA GATCACCGCC
GCCGTGCGCG CCCGCTTTCC TTCCATCCGC GAGCCCAAGC AGCAGGACAT CTGCTACGCC
ACGCAGAACC GCCAGGACGC GGTGAAGCTG CTCAGCCCGC AGGTGGATCT GGTGATCGTG
GTGGGCAGCC CCACCAGCTC CAACAGCAAC CGCCTGCGTG AGCTGGCAGC GCGCCTGGGC
ACGCCGGCCT ACATGATCGA CAGCGTGGAC GAGCTGCGCC ACGAGTGGTT TGACGGCATC
TCCCGCGTGG GCCTCACGGC CGGTGCGTCG GCACCCGAGG TGCTGGTGCA GGCCGTGATC
ACGCGCATCA AGGAACTGGG CGCGGTGGCC GTGCGCAAGC TGGACGGCAT CGAGGAAACC
GTGAAATTCC CGCTGCCCAA GGGCCTGAAG CTGGACACCG TGACGGGCCT GGAGATCACC
GAGCGCACGC CCGAAACCGG CCCGGGCGGA CACTGA
|
|---|
| Protein sequence | MQKPQEIVLA EPRGFCAGVD RAIEIVERAI AKFGAPIYVR HEIVHNTYVV NDLKAKGAIF
IEDLDEVPPG ATLIFSAHGV SRAVQDEARA RGFTIFDATC PLVTKVHVEV AKLAKEGYEF
IMIGHKGHPE VEGTMGQLDH GIHLVEDVAD VARVQPAQTE KLAVVTQTTL SVDDAAEITA
AVRARFPSIR EPKQQDICYA TQNRQDAVKL LSPQVDLVIV VGSPTSSNSN RLRELAARLG
TPAYMIDSVD ELRHEWFDGI SRVGLTAGAS APEVLVQAVI TRIKELGAVA VRKLDGIEET
VKFPLPKGLK LDTVTGLEIT ERTPETGPGG H
|
|---|
| |