| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2485 |
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| Symbol | |
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| ID | 7384755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 2643711 |
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| End bp | 2646116 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643655793 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_002553921 |
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| Protein GI | 222111657 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.187412 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGTTC AAAAGTCCGC GAAGTCGCCC AAGTCTGCCT CTGGCACCCC CGCGAAGGCC
GCTTCCAAAG CCGCAACCAC TGTGAAAGCC GCCGCCAAGG CGCCCGCGAA AGCCGCCCCT
GTCAAGGCCG CTGCCGCCGC GCCCAAGGCT GCGCCGAAAG TCAAGACTGT GTCCACGCCG
AAAACTGCTG CCGAGCTGAA AAAAGCCGCT GATGAACTGT TGAAGAAGAA GCCCGCGCGC
GCCAAGGCGG CTGCTGCCGA GCCCGAAGTC GCCGAAGAGG CGCCCAAGAA GAAGCCCGGC
CGCCCCGCCA AGGCCGCCGG CACCACCGCT GCCGCCAAGG CCCCTGCCAA GCGCGGCCGC
AAGCCCAAGG CCAAGGAAGA AGGCCTGGAG GACGACGCCG ACCTGTCCGA CATCGAGTCC
GACCTCGAAG GCGAGCCCGA AGCCGAGGTG GTTGAGGCCG CCGAAGCCGC CCCGGTCGAG
AAGGCCAAGC CCCTGCGCAT GAAGATCAGC AAGGCCAAGG AACGCGCCTT GATGAAGGAG
TTCGGCCTGG ACGAGACCGT GCTGTCCGAA GAGGACATGG CCAAGCGCCG CTCGCAGCTC
AAGAAGCTGA TCACGCTGGG CAAGACGCGC GGCTACCTCA CGCAGGTGGA AATCTCCGAC
CACCTGCCCG ACAAGCTGGT GGACGCCGAA ACCATGGAAG TCGTGGTCGC CATGCTGGGC
GACATGGGCG TGGCCGTGTA CGAGCAAACG CCCGACGCGG AAACCCTGTT CCAGAACAAC
GTGACCCCCA CGGCCACCAC CGTGGAGGAG GCCGAGGAAG AAGCCGAGGC CGCCCTGTCC
ACCGTGGACT CGGAATTCGG CCGCACCACC GACCCCGTGC GCATGTACAT GCGCGAGATG
GGTACGGTGG AGCTGCTCAC GCGCGAAGGC GAGATCGAGA TCGCCAAGCG CATCGAGGGC
GGCCTGATGG ACATGATGGA GGCCATCAGC GCCTCGCCCG CCACCATCGC CGAGATCCTC
AACATGGGTG AGGAAATCCG CGAGGGCAAG GTCGTCATCT CCACCGTGGT GGACGGCTTC
TCCAATCCCA ACGAGGCCGA CGACTACGTG GCCGAGGAAG ACTTCGACGA GTTCGACGAG
GAAGACGACG ACGACGGCAA GGGCGGCTCC AAGGCGCTGA CCAAGAAGCT GGAAGAGCTC
AAGAACGAGG CCCTGCGCCG CTTCGACACG CTGCGCGCGC TGTTCGAGAA GATGCACAAG
ATCTACGACA AGGACGGCTA CGGCGGTCCC GCGTACATGA AGGTGCAGCA CGAGATCTCG
GCAGAGCTGA TGACCATCCG TTTCACGGCC AAGACCATCG AGAAGCTGTG CGACATGGTG
CGCGCCCAGG TGGACGACGT GCGCAAGAAG GAGCGCGAGC TGCGCCGCAT CATCGTGGAC
AAGTGCGGTA TGCCCCAGGA GACCTTCATC AAGGACTTCC CGGCCAACCT GCTGAACCTG
CAGTGGGTCG AGAAGCAGGC CGCCGCCGGC AAGCCCTGGA GCGCCGTGAT GCAGCGCAAC
ATCCCGCCGA TCCAGGAACT GCAGCAAAAG CTGATGGACC TGCAGGCGCG CGTGGTGGTG
CCGCTGTCCG AGCTCAAGGA GATCAACAAG CGCATGAACG CGGGTGAAGC CAGCTCGCGC
GACGCCAAGA AGGAGATGAT CGAGGCCAAC CTGCGCCTGG TGATCTCGAT CGCCAAGAAG
TACACCAACC GCGGCCTGCA GTTCCTGGAT CTGATCCAGG AGGGCAACAT CGGCCTGATG
AAGGCGGTGG ACAAGTTCGA ATACCGCCGC GGCTACAAGT TCTCGACCTA CGCCACGTGG
TGGATCCGCC AGGCGATCAC ACGATCCATC GCGGATCAAG CTCGAACCAT CCGCATCCCG
GTGCACATGA TCGAGACCAT CAACAAGATG AACCGCATCA GCCGCCAGCA CCTGCAGGAG
TTCGGCTTCG AGCCCGATGC GTCCATCCTG GCCGCGAAGA TGGAGATCCC CGAGGACAAG
ATCCGCAAGA TCATGAAGAT CGCCAAGGAG CCGATCTCGA TGGAAACCCC CATCGGCGAC
GACGACGACA GCCACCTGGG CGACTTCATC GAGGACAGCA GCAACACCGC ACCCGTGGAC
GCCGCCATGC AAGCCGGCCT GCGCGACGTG GTGAAGGACA TCCTCGACGG CCTGACCCCG
CGCGAAGCCA AGGTGCTGCG CATGCGCTTC GGCATCGAAA TGTCCACCGA CCACACGCTG
GAAGAAGTGG GCAAGCAGTT CGACGTGACG CGCGAACGCA TCCGCCAGAT CGAGGCCAAG
GCGCTGCGCA AGCTCAAGCA CCCGAGCCGC TCGGACAAGC TGCGCAGCTT CATCGACTCG
CTGTAA
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| Protein sequence | MPVQKSAKSP KSASGTPAKA ASKAATTVKA AAKAPAKAAP VKAAAAAPKA APKVKTVSTP
KTAAELKKAA DELLKKKPAR AKAAAAEPEV AEEAPKKKPG RPAKAAGTTA AAKAPAKRGR
KPKAKEEGLE DDADLSDIES DLEGEPEAEV VEAAEAAPVE KAKPLRMKIS KAKERALMKE
FGLDETVLSE EDMAKRRSQL KKLITLGKTR GYLTQVEISD HLPDKLVDAE TMEVVVAMLG
DMGVAVYEQT PDAETLFQNN VTPTATTVEE AEEEAEAALS TVDSEFGRTT DPVRMYMREM
GTVELLTREG EIEIAKRIEG GLMDMMEAIS ASPATIAEIL NMGEEIREGK VVISTVVDGF
SNPNEADDYV AEEDFDEFDE EDDDDGKGGS KALTKKLEEL KNEALRRFDT LRALFEKMHK
IYDKDGYGGP AYMKVQHEIS AELMTIRFTA KTIEKLCDMV RAQVDDVRKK ERELRRIIVD
KCGMPQETFI KDFPANLLNL QWVEKQAAAG KPWSAVMQRN IPPIQELQQK LMDLQARVVV
PLSELKEINK RMNAGEASSR DAKKEMIEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKM NRISRQHLQE
FGFEPDASIL AAKMEIPEDK IRKIMKIAKE PISMETPIGD DDDSHLGDFI EDSSNTAPVD
AAMQAGLRDV VKDILDGLTP REAKVLRMRF GIEMSTDHTL EEVGKQFDVT RERIRQIEAK
ALRKLKHPSR SDKLRSFIDS L
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