Gene Dtpsy_2453 details

Gene Information

• Locus tag: Dtpsy_2453
• ID: 7383955
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: +
• Start bp: 2606770
• End bp: 2608671
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 643655761
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_002553889
• Protein GI: 222111625
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGATG CTCCGCGGCT GTCTCTGCGC GCACTGCTGC CTTCGCTGTC ACCCAGGGTG 
CGGCGGGGCG AAGGGCCGCT GGCGCGGCTG CTGCGCGCGG GTGGGCTGCA CTGCGTATTC 
CAGCCCCTGG CCGACCTGCG CGAGGGGAAC ATCTATTCAC ACGAGGCGCT GATCCGCGGC 
CCAGAGGACT CGCCGCTGCA GTCGCCCGAC GCCTTGCTGG CCCAGGCACG CGCCGAAGAC 
CTGCTGCACG ACTTCGAACT GCTGTGCGTC GCGCAGGCAC TCACCCAATG GGGCCAGCAG 
GCCACGCCGG GCCGGCTGTT CGTGAACATC AGCGCCGACG CGCTGGTCTG GGGCGTCGGG 
CTGTGCGGCG CGGAGCCTCT GGCCCACGTG GTGCGCCGGC TGGGCGTGTC CCCGCACATG 
GTGGTGCTGG AGATCACCGA GCACGAGCGC GTGCACGACC TGGTGCCGCT GCGCGACGCA 
CTGCGCCAGG TGCACGCCAG TGGCATGCGC CTGGCGCTGG ACGACTTCGG CGACGGCCAT 
TCCAGCCTGC GCCTGTGGTC GGAGGTGCGC CCCGACTTCG TGAAGATCGA CAAGTACTTC 
ACGCGCGACA TCGGCCAGCA CCCCGAGAAG CTGCAGATGC TGCAGGCGAT CCGCGGCATT 
GCCGAAGTGT TCGGCACTAC GCTGGTGGCC GAAGGCATCG AGACCAGCGA CGAGCTGCGC 
GCGCTGCGCG ACCTCGATAT TTCCTACGGC CAGGGCTACC TGCTGGGCCG GCCCGCGCGT 
ACCGCTCGCA TGGCGATCGA GCCGCCCGCG CTGTCCGTGC TGCGGGACCG CCGCGTGGCC 
GTGCTGCCGC ACGGCGGCCA GCCCATGCGC CCGGGCATCC TGCGCAACCT GCTCATGGCG 
CAGGCGCCCA CCGTCACGCC CTGCACCAGC AACGATGCGG TGGCCGAGCT GTTTCGCACG 
CATGGCGATC TGCACGCCAT TGCGGTGCTG GAGTGCGAAC GCCCCGTGGC GCTCATCAAC 
CGCCAAGAGT TCATGAACCA CTACGCCACG CTGTACTTTC GCGAGGTGCA CGGCCGCAAA 
CCCTGCATGG CGTTCGCCAG TACGTCGCCG CGCGTGGTGG AGATGGACTG CGACGTGGAG 
CATCTGGTGG GCATCCTCAC CTCGCAGGAC CAGCGCTACC TCAACGACGG CTTCATCGTC 
ACCGACAACG GGCGCTACGC GGGCCTGGGC ACCGGCGAGC AACTGGTGCG CGGCGTGACC 
GAAGCGCGCA TCGAGGCCGC GCGCCACGCC AACCCCCTCA CCTTCCTGCC CGGCAACATC 
CCCATCAGCC TGCACATGCA GCGCCTGCTG GACAACCGCG CGGCCTTCGT CGCCTGCTAC 
GCCGACCTGA ACCACTTCAA GCCCTTCAAC GACCACTACG GCTACTGGCG CGGCGACCAG 
ATGATCCGCC TGGTGGCGCG GCTGGCGCTG ACGCACTGCG ACCCGCAGGC CGACTTCGTG 
GGCCATGTGG GCGGTGACGA CTTCATGCTG CTGTTCCAGA GCAGCGACTG GCTGGCGCGC 
TGCCAGCGCA TCGTGGACTC GTTCGCGCGC GAGGCCATCG CCCTGTTCGA TGAATCCGCG 
CGCCAAGAAG GCGGCATCTG GGCCGAGGAC CGGCATGGCG TGAACCGTTT CTTTCGCTGC 
ACCACGCTGT CGATCGGCGC GGTGCGCGTG CCGCCGGGCA GCATGGAGCA TGCCGAAGAG 
GTGGCCAACC TCGCGGCGCT GGCCAAGCGC GATGCCAAGC AGTCGCACGC GGGCATCGCC 
TGGCGCGACG CCGGCCCAGG CGGGCTGGTC TGCCTGCAAT CGCCCTTGAC GACCATCGAT 
GCGGCGCGCG CCGCGCCGCG GGCCCAGGCC GGCGCGCACT AG 

 

Protein sequence

MPDAPRLSLR ALLPSLSPRV RRGEGPLARL LRAGGLHCVF QPLADLREGN IYSHEALIRG 
PEDSPLQSPD ALLAQARAED LLHDFELLCV AQALTQWGQQ ATPGRLFVNI SADALVWGVG 
LCGAEPLAHV VRRLGVSPHM VVLEITEHER VHDLVPLRDA LRQVHASGMR LALDDFGDGH 
SSLRLWSEVR PDFVKIDKYF TRDIGQHPEK LQMLQAIRGI AEVFGTTLVA EGIETSDELR 
ALRDLDISYG QGYLLGRPAR TARMAIEPPA LSVLRDRRVA VLPHGGQPMR PGILRNLLMA 
QAPTVTPCTS NDAVAELFRT HGDLHAIAVL ECERPVALIN RQEFMNHYAT LYFREVHGRK 
PCMAFASTSP RVVEMDCDVE HLVGILTSQD QRYLNDGFIV TDNGRYAGLG TGEQLVRGVT 
EARIEAARHA NPLTFLPGNI PISLHMQRLL DNRAAFVACY ADLNHFKPFN DHYGYWRGDQ 
MIRLVARLAL THCDPQADFV GHVGGDDFML LFQSSDWLAR CQRIVDSFAR EAIALFDESA 
RQEGGIWAED RHGVNRFFRC TTLSIGAVRV PPGSMEHAEE VANLAALAKR DAKQSHAGIA 
WRDAGPGGLV CLQSPLTTID AARAAPRAQA GAH