| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1899 |
|---|
| Symbol | |
|---|
| ID | 7382260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | + |
|---|
| Start bp | 2027857 |
|---|
| End bp | 2028654 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643655216 |
|---|
| Product | outer membrane assembly lipoprotein YfiO |
|---|
| Protein accession | YP_002553356 |
|---|
| Protein GI | 222111092 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGTT TTCCCCTGCC TTTGATTTCT GCCCTGCTCG CCGCCGGCCT GCTGGCTGCC
TGCTCCAGCA CGCCTGAAGA CAAGACCGCT GGCTGGAGCA CCGACAAGAT TTATTCGGAA
GCACGCGACG AGCTCAATGG CGGCTCTTAC GACAAAGCCG TGCCGCTGCT GGAAAAGCTG
GAAGGACGCG CCGCCGGCAC GCCGTTGGCA CAACAGGCCC AGTTGGAAAA GGCCTACGCG
CAATACAAGG GCGGCGAGAA GGCGCAGGCT ATTGCCACGC TGGACCGCTT CATGAAACTG
CACCCCGCCA GCCCAGCGTA CGACTATGCG CTGTACCTCA AAGGCTTGGT GAACTTCAAC
GACAACCTGG GCCTGTTCTC GTGGCTCTCG CGCCAGGACC TGTCGGAGCG CGACCAGAAG
GCTGCCAAGG ACTCGTTCGA GTCCTTCCGC GAACTGGTGA CCCGCTTCCC CGAGTCGCGC
TACACGCCCG ACGCCCGCCA GCGCATGACC TACATCGTCA ACTCGCTGGC GCAGTACGAG
GTACACGTGG CGCGCTACTA CTATGAACGC GGCGCGTACG TGGCCGCCGT GAGCCGCGCG
CAGAGTGCCG TTGCCGACTA CAAGGATGTT CCAGCGACGG AAGAGGCTCT GTACATCCTG
GTTCGGTCGT ACGACGCGCT GGGACTCACG CAACTGCGTG ACGACACCCG CCGCGTGATG
GATGCTTCCT ATCCTCAGAG CAGCCTGCCG CAGACGGGAT TCAAGGCGAA GGCGAACCCC
TGGTGGAAGT TCTGGTAA
|
|---|
| Protein sequence | MPRFPLPLIS ALLAAGLLAA CSSTPEDKTA GWSTDKIYSE ARDELNGGSY DKAVPLLEKL
EGRAAGTPLA QQAQLEKAYA QYKGGEKAQA IATLDRFMKL HPASPAYDYA LYLKGLVNFN
DNLGLFSWLS RQDLSERDQK AAKDSFESFR ELVTRFPESR YTPDARQRMT YIVNSLAQYE
VHVARYYYER GAYVAAVSRA QSAVADYKDV PATEEALYIL VRSYDALGLT QLRDDTRRVM
DASYPQSSLP QTGFKAKANP WWKFW
|
|---|
| |