| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1121 |
|---|
| Symbol | |
|---|
| ID | 7382936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 1174971 |
|---|
| End bp | 1175810 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643654442 |
|---|
| Product | squalene synthase HpnD |
|---|
| Protein accession | YP_002552598 |
|---|
| Protein GI | 222110334 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.148736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCTG AACAGTACGT CCAGCAAAAG GCCGCCGCCT CCGGCAGCAG CTTCTACTAC
GCTTTCCTCT TCCTGCCGCG CGAGCGGCGT ACGGCCATCA CGGCCTTCTA CGCCTTTTGC
CGCGAGGTGG ACGACGTGGT GGACGAAGTC TCCGAAGCCA GCGTGGCCCA GGCCAAACTG
GCCTGGTGGC AGGGCGAGGT GGCCAAGGCC TTTGCCGGCC AGCCCAGCCA CCCGGTGATG
CAGGCGCTGA TGCCGCATGC GGCCGCCTAC GGCATCGAAC AGCGCCACCT GCTGGCCGTG
ATCGAGGGCT GCCAGATGGA CCTGGAGCAG ACGCGCTACC TGGACTTCGC GGGCCTGGCG
CGCTACTGCC ACCTGGTGGC CGGCGTGGTG GGCGAGGTGG CGGCGCGCAT CTTCGGCCAG
CAAGATGAGC GCACCACGCA GTACGCGCAC AAGCTGGGCC TGGCGTTCCA GCTCACCAAC
ATCATCCGCG ACGTGGGCGA GGACGCCATG CGCGGGCGCA TCTACCTGCC CATTTCCGAG
CTGCAGCAGT TCGATGTGAA GGCGCACGAG ATCACCAAAC GCGAGTATTC GGAGCGCTTC
ACCGCGCTGA TGCGCTTTCA GGCCGAGCGC GCGCACCTCT TTTACGACCA GGCGCTGGCG
CTGCTGCCCG ACGTGGATCG GCGCGCGCAG AAGCCCGGCC TGATGATGGC CAGCATCTAC
CGCACGCTGC TGCGCGAGAT CGAGGCCGAC AACTTCCAGG TACTGCACCA GCGCACCAGC
CTCACGCCGC TGCGCAAGTT CTGGCTGGCC TGGAAGGTGC AGGCGCTGGG GATGATGTGA
|
|---|
| Protein sequence | MSPEQYVQQK AAASGSSFYY AFLFLPRERR TAITAFYAFC REVDDVVDEV SEASVAQAKL
AWWQGEVAKA FAGQPSHPVM QALMPHAAAY GIEQRHLLAV IEGCQMDLEQ TRYLDFAGLA
RYCHLVAGVV GEVAARIFGQ QDERTTQYAH KLGLAFQLTN IIRDVGEDAM RGRIYLPISE
LQQFDVKAHE ITKREYSERF TALMRFQAER AHLFYDQALA LLPDVDRRAQ KPGLMMASIY
RTLLREIEAD NFQVLHQRTS LTPLRKFWLA WKVQALGMM
|
|---|
| |