| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_1076 |
|---|
| Symbol | |
|---|
| ID | 7382885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax ebreus TPSY |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011992 |
|---|
| Strand | - |
|---|
| Start bp | 1121320 |
|---|
| End bp | 1123974 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643654391 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_002552553 |
|---|
| Protein GI | 222110289 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGGA AACCCGCGCC CACCCCGCGC CCCGACGAGG CCGACTTCTC GAACCACACG
CCGATGATGG CGCAGTACCT GGCCCTGAAG GCGCAGCACC CCGACACGCT GCTGCTGTAC
CGCATGGGCG ACTTCTACGA GCTTTTCTAC GCCGATGCCG AGAAGGCCGC TCGCCTGCTG
GACATCACAC TCACCCAACG CGGCCAGTCG GCCGGCCAGC CGGTGACCAT GGCGGGCGTG
CCCTTCCATG CGCTGGAGAA CTACCTGGGC CGCCTCATCA AGATGGGCGA GTCGGTCGCC
ATTGCCGAGC AGGTGGGCGA AGTGGGCGCC GCCAAGGGCC CCGTGGAGCG CAAGGTGGTG
CGTGTGGTCA CCCCCGGCAC GCTCACCGAT AGCGAACTGT TGTCCGACAA GAGCGAGTCC
ATGCTGCTGG CCGTGCACCA GGGCGCGCGT GCGCGCTGCG GCCTGGCGTG GCTCTCCGTC
ACCCAGGGTG TGGTGCAGCT GGCCGAATGT GCACAGGCCG ACGTGGGCAC CTGGCTCGCA
CGCATTGCCC CCAGCGAGGT GATCTACAGC GCGGGCATCA CCCAGCGCTT TGAAGAACAA
CTGACCCAGT TGCGCCAGGG CGGCGTGTTC ACCTGCCCCA TGAGCCTGCG GCCCGACTGG
CAGTTCGATG GTGCCCTGGG CGAGCGCAAG CTGCTGGAAC ACCTCGGCGC GGCCAGCCTG
CAGGCCTGGA ATGCCGAGGC CCTGCCCCAC GCCCATGCCG CCGCCGCCGC GCTGCTGCAG
TACGCCGAGC ACACGCAAGG CCGCGCACTC ACCCATGTGC ACGGCGTGCG CGTACAGCAA
AGCGACGAGC TGATCCACCT GCCCCTGGCC ACGCGGCGCA ACCTGGAGCT GGTGAAGACC
CTGCGCGGCG AGGACGCGCC CACGCTGTTC TCGCTGCTGG ACACCTGCAT GACCGGCATG
GGCAGCCGCC TGCTCAAGAC CTGGCTGCTG GAGCCGCGCC GCGACCGCAG CGACGCGCGC
CAGCGCCTGG CGGCCACGGC CGCGCTGCGC GGCGCCGGCA GCGGCCAGGG CCCGTGGCAG
CTCCTGCGCA GCGAACTGCG CGGCGTGAGC GACGTGGAGC GCATCACCGC GCGCATCGCG
CTGCGCCAGG TGCGCCCGCG CGAGCTGGTG GCGCTGTGCA AGACGCTACA AAAAGCAGAG
CTGCTCGCGC TCAACAGTCA AGCGCCAGAG CCGTTTTTGG CCCAAATCTT CAGCCACCTG
CAGCCCCCCG TCGACTGCGC GGCGCTGCTG CGTGCCGCCA TCCTGGAGGA ACCCGCCGCC
CTGGTGCGCG ACGGCGGCGT GATCGCGCCG GGCTTCGATG CCGAGCTGGA CGAGCTGCGC
GGCATCCAGA ACAACTGCGA CGACTTCCTG CTCGATCTGG AGACGCGCGA GAAGGCACGC
ACCGGCATCC CCAACCTGCG TGTGCAGTTC AACAAGGTGC ATGGCTTCTA CATCGAGGTC
ACCAGCAGCC ACGCTGACAA GGTGCCCGAG GACTACCGCC GCCGCCAGAC ACTGAAGAAC
GCCGAGCGCT TCATCACGCC CGAGCTGAAG ACCTTCGAGG ACAAGGCACT GTCGGCCCAG
GAACGCGGCC TCGCACGCGA GAAGTGGCTG TACGAGCAGG TGCTGGACCA GCTGCAGCCG
CATGTGCCCC AGCTCACGCG GCTGGCGCAG GCGCTGGCCA CGCTGGACGT GCTGTGCACG
CTGGCCGAGC GCTCGCTCAC GCTCAACTGG TGCGCACCGC AATTCGTCAA CGAGCCCTGC
ATCGACATCG AGGCGGGCCG CCACCCCGTG GTGGAGGCCC GGCTGGCCGA AACATCAAGC
GGCGCCTTCA TCCCCAACCA CACGCGCCTG CACGCCAACG CGCGCATGCA GATCATCACC
GGCCCCAACA TGGGCGGTAA GTCCACCTAC ATGCGGCAGG TCGCCCTGAT CGTGCTGCTG
GCGAGCATGG GCAGCCACGT GCCGGCCGCG GCCTGCCGGC TGGGTCCCAT CGACGCGATC
CACACCCGCA TCGGCGCGGC CGACGATCTG GCCAATGCCC AGTCCACCTT CATGTTGGAG
ATGACCGAGG CGGCGCAGAT CCTGCACGCC GCCACGCCGC ACAGCCTGGT GCTGATGGAC
GAGATCGGCC GCGGCACCAG CACCTTCGAC GGGTTGGCGC TGGCCAGCGG CATCGCCACC
CATCTGCATG ACAAGACCCG CGCGTTCACG CTGTTCGCCA CGCATTACTT CGAGCTGACC
GAACTGGCGG CGCGCCACCC GCACGCGGTG AACGTGCACG TGGGCGCCAC CGAGTCCGGC
CACGATATCG TCTTCCTGCA CGAGATCCAG CCTGGCCCCG CCAGCCGCAG CTACGGCATC
CAGGTGGCGA AGCTGGCGGG GGTGCCCGCC GCCGTGCTGC ACCACGCGCG CCACACGCTC
GCCGCACTGG AAGAACGCGC GGGCGAGGAT GAGCTGCAGG TGGACCTGTT CGCTCCGCCG
CCCGCGCCCG AGGTGGCGAC CGTGAGCCCC GTGGAGTCCG CCCTGGCGCA GATCCACCCG
GACCAGCTGT CGCCCCGCGA GGCGCTGGAC GCGCTCTACC AGCTCAAGCG GCTGAGCACG
CCCGGTTTTG AATAA
|
|---|
| Protein sequence | MTGKPAPTPR PDEADFSNHT PMMAQYLALK AQHPDTLLLY RMGDFYELFY ADAEKAARLL
DITLTQRGQS AGQPVTMAGV PFHALENYLG RLIKMGESVA IAEQVGEVGA AKGPVERKVV
RVVTPGTLTD SELLSDKSES MLLAVHQGAR ARCGLAWLSV TQGVVQLAEC AQADVGTWLA
RIAPSEVIYS AGITQRFEEQ LTQLRQGGVF TCPMSLRPDW QFDGALGERK LLEHLGAASL
QAWNAEALPH AHAAAAALLQ YAEHTQGRAL THVHGVRVQQ SDELIHLPLA TRRNLELVKT
LRGEDAPTLF SLLDTCMTGM GSRLLKTWLL EPRRDRSDAR QRLAATAALR GAGSGQGPWQ
LLRSELRGVS DVERITARIA LRQVRPRELV ALCKTLQKAE LLALNSQAPE PFLAQIFSHL
QPPVDCAALL RAAILEEPAA LVRDGGVIAP GFDAELDELR GIQNNCDDFL LDLETREKAR
TGIPNLRVQF NKVHGFYIEV TSSHADKVPE DYRRRQTLKN AERFITPELK TFEDKALSAQ
ERGLAREKWL YEQVLDQLQP HVPQLTRLAQ ALATLDVLCT LAERSLTLNW CAPQFVNEPC
IDIEAGRHPV VEARLAETSS GAFIPNHTRL HANARMQIIT GPNMGGKSTY MRQVALIVLL
ASMGSHVPAA ACRLGPIDAI HTRIGAADDL ANAQSTFMLE MTEAAQILHA ATPHSLVLMD
EIGRGTSTFD GLALASGIAT HLHDKTRAFT LFATHYFELT ELAARHPHAV NVHVGATESG
HDIVFLHEIQ PGPASRSYGI QVAKLAGVPA AVLHHARHTL AALEERAGED ELQVDLFAPP
PAPEVATVSP VESALAQIHP DQLSPREALD ALYQLKRLST PGFE
|
|---|
| |