Gene Dtpsy_1012 details

Gene Information

• Locus tag: Dtpsy_1012
• ID: 7382330
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: +
• Start bp: 1052210
• End bp: 1054090
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643654327
• Product: TonB-dependent receptor
• Protein accession: YP_002552490
• Protein GI: 222110226
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein
• TIGRFAM ID: [TIGR01779] TonB-dependent vitamin B12 receptor

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAACA CCCGTCCGTT CAATGTGCGC TTGAGTGCGC TTTCCGTGCA CGCGCGCGTC 
GCCGTGCTGC CGCTGGCGCT GGCCGCCGCT TTCCCCGCCG TGTCCCAGAC CCTGCTGGCC 
CAGGCAGCCA CAGAACCCCA ACTGCGTGAA ACCGTCATCA CGGCAACCCG CGTGGCCCGG 
CCGCTGGCCG ACATCGTGTC CGATGTGTCC GTCATCGACC GTGAAACTAT CGAAGCCAGC 
GGCGCGGTAG GCGTCATTGA CGTGATCTCG CGCCTGCCAG GCGTGCAGAT CACGCGCAAT 
GGCGGCCAGG GCAGCAATGG CAGCGTCTAC CTGCGCGGCG CGGAGTCGCG CTTTACCGCC 
GTGTACCTGG ACGGCGTGCG CCTGGACTCG CAATCCACCG GCGGCGTGGT GTGGGAGCAA 
ATCCCGTTGT CGCAGATCGA CCGCATCGAG GTCGTGCGCG GGCCAGCGGC TGCTGTATAC 
GGCTCGGATG CCATGGGAGG CGTGATCCAG CTCTTCACCA AAAAGGGCGA GGGTGCGCCG 
GCGCCCTACG TGGGCGTGGG CCTGGGCAAC CAGGGCACGC GGACGGTGCA GGCCGGCGTG 
AGTGGTGGCA CCGAGCAGGT GGACTATGCG CTGGGGCTGT CGCATGAGCG CGCCGATGGC 
TTCAGTGCCC GCGTAGGCTC CGCCTACAAC CCGGACGAAG ACGGCTACCG CCGCACCTCT 
GCCAATGCCC GACTGGGCGT GCAGTTGGAC ACGACCCATC GCCTGGAGGG CACGCTGCTG 
GCCAGCAACC TCAACTCGCA GTACGACGGC AGCAAAACGG CCGACGACCG CAATCACCAC 
CAATTGCGCA CGGCCAGCCT GGCATGGCTG GCCAAGTGGA GCGACGTGTA CAGCACGCGC 
TTGCAGGTCA CGCAGGGGCA GAGTGAATAC AGCACCCGGC CCAACTTCTA CATGACCGAG 
ACCACGCTGC ACAATTACCT GCTGCAAAAC GAGTGGCGCC TGGGCGCGCA TCTGTTCACA 
GCCGCGCTGG AGCGCCGCGA GGACGAGTTG CACAACCCCG CCACCGAGTT CGTGGGCGAC 
CTCCAGCGTG ACCGCTCACA GAACGCGCTC GCGCTGGGCT ATGGCCTGAA CCAGGGCGCC 
CATACGCTGC AGGCCAACCT GCGCTATGAC GACGACAGCG AGTTCGGCGG CAAAAGCACG 
GGCAGCCTGT CCTATGGCTA CGCCATTACG CCGCAGTGGC GCGTCACCGC AGCGGCCGGC 
ACGTCCTTCC GTGCACCCAC GCTCTACCAC CGCTTCAGCG AATACGGCGC GCCCGACCTG 
CAGCCCGAGA AGGGGCGCAA CGTGGAGCTG GGCGCGCGGT GGACGCAAGG AGAGAGCAGC 
GTGGGTGTCG TGGCGTACCG CAACCGCGTC AGCAACCTCA TCAATTTCGG CGCCGCGGGC 
CGCTGTGATT CCAGCTTCGG CTGCTACGAG AACGTGGGCC GCGCCGAGTA CAAGGGCGTG 
ACGCTGTCGG CCGCACACCG CATCGCGGGC GTGTCGCTGC ATGGCTCCAT CGACTGGCAG 
AACCCGCGTG ACCTGGACAG CGGCAAACTG CTGGCGCGCC GTGCCAAGCG CTACGCCACG 
CTGGCTGCCG ACACCCTGGT GGCAGGCTGG ACGCTGGGGG CAGAACTCTA CGCATCCGCG 
CGCCGGTACG ACAACGCGGC CAACACCAAC GTACTGGGCG GCTACACCAC GCTCAACCTC 
TACACCAGCA AGCGCGTGGC GCGCGACGTG ACGCTGCTGG CCCGCGTCGA CAACCTGGCC 
GACAAGGACT ACCAGTTGGC GCGCACCTAC GCCACCGGCG GCCGCACGTT CTACGTGGGC 
CTGAAGTGGG CGCCGCAGTA A 

 

Protein sequence

MTNTRPFNVR LSALSVHARV AVLPLALAAA FPAVSQTLLA QAATEPQLRE TVITATRVAR 
PLADIVSDVS VIDRETIEAS GAVGVIDVIS RLPGVQITRN GGQGSNGSVY LRGAESRFTA 
VYLDGVRLDS QSTGGVVWEQ IPLSQIDRIE VVRGPAAAVY GSDAMGGVIQ LFTKKGEGAP 
APYVGVGLGN QGTRTVQAGV SGGTEQVDYA LGLSHERADG FSARVGSAYN PDEDGYRRTS 
ANARLGVQLD TTHRLEGTLL ASNLNSQYDG SKTADDRNHH QLRTASLAWL AKWSDVYSTR 
LQVTQGQSEY STRPNFYMTE TTLHNYLLQN EWRLGAHLFT AALERREDEL HNPATEFVGD 
LQRDRSQNAL ALGYGLNQGA HTLQANLRYD DDSEFGGKST GSLSYGYAIT PQWRVTAAAG 
TSFRAPTLYH RFSEYGAPDL QPEKGRNVEL GARWTQGESS VGVVAYRNRV SNLINFGAAG 
RCDSSFGCYE NVGRAEYKGV TLSAAHRIAG VSLHGSIDWQ NPRDLDSGKL LARRAKRYAT 
LAADTLVAGW TLGAELYASA RRYDNAANTN VLGGYTTLNL YTSKRVARDV TLLARVDNLA 
DKDYQLARTY ATGGRTFYVG LKWAPQ