| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_0942 |
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| Symbol | |
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| ID | 7384445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | + |
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| Start bp | 966480 |
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| End bp | 969713 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643654257 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_002552420 |
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| Protein GI | 222110156 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.26246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTGT CCCGCTTCTT CATCGACCGC CCGATCTTCG CGGGCGTACT GTCGGTGCTC
ATCTTTCTTG CCGGGCTGAT CGCGCTGCGC GCGCTGCCGA TCTCGGAATA CCCCGAGGTC
GCGCCGCCCT CCGTGGTGGT GCGCGCCACC TACCCTGGCG CCAACCCCAA GGTGATCGCC
GAGACCGTGG CCATGCCGCT GGAGGAATCC ATCAACGGCG TGGAGGGCAT GCTCTACATG
GGCAGCCAGG CCACGACCGA CGGCGTGATG ACGCTCACCG TGACCTTTGC CCTGGGCACC
GACCCGGATA AGGCGCAGCA ACTGGTGCAG AACCGCGTCT CGCAGGCCGA GCCGCGGCTG
CCGGAGGAGG TGCGCCGCTT GGGGCTGACC ACGGTCAAGA GCGCACCCGA CCTGACGATG
GTCGTGCACA TGGTCTCGCC CAACGGCCGC TACGACATCG ACTATCTGCG CAACTACGCC
GTGCTCAATG TGAAGGACCG CCTCGCGCGC ATCCAGGGCG TGGGGCAGGT GCAGATCTTT
GGCGGCGGCG ACTACTCCAT GCGCGTGTGG CTCGACCCGC AGAAGGTCGC GCAGCGCGGC
CTCTCGGCCA GTGATGTGGT GGCCGCCATC CGCGGTCAGA ACGTGCAGGC CGCGGCCGGC
GTGGTGGGCG CATCGCCGGG CCTGCCGGGC GTGGACCTGC AGCTGTCCAT CAACGCGCAG
GGGCGCCTCA CGACCGAGGA AGAGTTCGGC GACATCATCG TCAAGACCGG CGAGGATGGC
GCGGTGACCC GTCTGCGCGA CGTGGCCCGG CTGGAGCTGG GCGCGGCCGA CTACGCGCTG
CGCTCGCTGC TCAACAACGA CCCGGCCGTG GGCATGGGCG TGTTCCAGGC GCCGGGGTCC
AACGCGCTGG ACATTTCCAC CAACGTGCGC GCCACCATGG CAGAGCTGCA AAAGAACATG
CCCGAGGGCG TGGAGTTCCG CATCGCCTAC GACCCCACGC AGTTCGTGCG GGCGTCGATC
AAATCCGTCA TCCAGACGCT GCTGGAAGCC GTGGCGCTGG TGGTGATCGT GGTGATCCTG
TTCTTGCAGA CCTGGCGCGC CTCCATCATT CCGCTGCTGG CCGTGCCGGT GTCGGTAGTG
GGGACGTTCG CCGTGCTGCA CCTGCTGGGC GTCTCGATCA ACGCCTTGAG CCTGTTCGGA
CTGGTGTTGG CCATCGGCAT CGTGGTGGAC GACGCCATCG TGGTGGTGGA GAACGTGGAG
CGCAACATCG AGGCGGGCCT GACGCCGCGC GAGGCCACCT ACCGCGCCAT GCGCGAAGTG
AGCGGGCCCA TCATCGCCAT CGCGCTGGTG CTGGTGGCGG TGTTCGTGCC GCTGGCGTTC
ATCAGCGGCC TGACCGGGCA GTTCTACCGC CAGTTCGCGG TGACCATCGC CATCTCCACG
GTGATCTCGG CGATCAATTC GCTCACCCTG TCGCCAGCGT TGAGCGCGCT GCTGCTCAAG
GGCCACCACG AGCCCAAGGA TGCGCTCACG CGCGGCATGG ACCGTGCGTT CGGCGGTTTC
TTCCGCCGCT TCAACCACGT GTTCCACCGG GGCTCGCAGG CCTACAGCGG CGGCGTGCGC
CGCGTGGTGG GGCGCAAGGC GCTGATGCTG GCCATTTACC TGGCCCTGGT GGGCGTCACC
TGGGGCCTGT TCAAGGCCGT ACCGGGCGGC TTTGTGCCGG CGCAGGACAA ACAGTACCTG
ATCGGCTTTG CGCAGCTGCC CGACGGCGCC ACGCTGGACC GTACCGACGA CGTGATTCGC
CGCATGGGTG AAATCATGAA GAAGAACCCC AACGTGGAAG ACGCCATCGC GTTTCCGGGC
CTGTCGATCA ACGGCTTCAC CAACAGCTCC AACGCGGGCA TCGTGTTCGC CACGCTCAAG
CCCTTCGCCG AGCGCACGCG CGCCGACCAG AGCGGTGGGG CGGTGGCCGG GCAGCTGAAC
CAGGCATTCG GCGGCATCCA GGATGCGTTC ATCGCCATGT TCCCGCCGCC GCCGGTGGCG
GGGCTGGGCA CCACGGGCGG GTTCAAGCTG CAGATCGAGG ACCGTGCGTC GCTGGGCTAC
GAGGCCATGG ACGCGGCCGT GAAAGCCTTC ATGGCCAAGG CATACCAGAC GCCCGAGCTG
ACGGGCCTGT TCACGAGCTG GCAGGTCAAC GTGCCGCAGC TCTATGCCGC CATCGACCGC
ACCAAGGCAC GCCAGCTGGG CGTGCCGGTC ACGGACATCT TCGATACGCT GCAGATCTAC
CTGGGCAGCC TGTATGCCAA TGACTTCAAC CAGTTCGGCC GCACCTACAG CGTGCGCGTG
CAGGCCGACG CGGCCTTCCG TGCCCGCGCA GAAGACGTGG CGCTGCTGAA GGTACGCTCC
ACGACGGGCG AGATGGTGCC GCTGTCGGCG CTGATGAGGA TCGAGCCCAG CTTCGGCCCC
GAGCGTGCCA TGCGCTACAA CGGCTTCTTG TCGGCCGACG TGAACGGCGG GCCGGCGCCC
GGCTACTCGT CGGGCCAGGC GCGGGCGGCG GTGGAGCGCA TCGCCGCCGA GACGCTGCCC
CAGGGCATCT CCTTCGAATG GACCGAACTG ACCTACCAGG AGATCCTGGC CGGCAACTCC
GCGGTGTTGG TGTTCCCCAT CGCCATCCTG CTGGTGTTCC TGGTGCTGGC CGCGCAGTAC
GAGAGCCTCA CGCTGCCGAT CGCCATCATC CTGATCGTGC CCATGGGCCT GTTGGCCGCC
ATGACGGGCG TTTGGCTCAG CGGCGGGGAC AACAACGTGT TCACGCAGAT CGGGCTCATC
GTGCTGGTGG GACTGTCGGC CAAGAACGCC ATCCTGATCG TGGAGTTTGC GCGCGAGCTG
GAGTTTTCCG GCCGCACGCC GGTGCAGGCC GCCATCGAGG CCAGCCGCCT GCGGCTGCGG
CCCATCCTGA TGACCTCGCT GGCCTTCGTG ATGGGGGTGT TGCCCCTGGT GCTGTCCACC
GGTGCGGGTT CCGAGATGCG CAGCGCGATG GGCGTGGCGG TGTTCGCCGG AATGATCGGG
GTGACGGCCT TCGGTCTCTT CCTCACCCCC GTGTTCTACG TGGCGCTGCG CCGCATGGCC
GGTAACCGCC CGCTGCAGCA GCACGGTAGC CATACCGCGC CATTGATCGA AGAGACCGGC
GCCGGCGGCG CGGCGCGTCC CCTGCCGGCC GCGCCGCGCG GGCAGCACGA ATGA
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| Protein sequence | MNLSRFFIDR PIFAGVLSVL IFLAGLIALR ALPISEYPEV APPSVVVRAT YPGANPKVIA
ETVAMPLEES INGVEGMLYM GSQATTDGVM TLTVTFALGT DPDKAQQLVQ NRVSQAEPRL
PEEVRRLGLT TVKSAPDLTM VVHMVSPNGR YDIDYLRNYA VLNVKDRLAR IQGVGQVQIF
GGGDYSMRVW LDPQKVAQRG LSASDVVAAI RGQNVQAAAG VVGASPGLPG VDLQLSINAQ
GRLTTEEEFG DIIVKTGEDG AVTRLRDVAR LELGAADYAL RSLLNNDPAV GMGVFQAPGS
NALDISTNVR ATMAELQKNM PEGVEFRIAY DPTQFVRASI KSVIQTLLEA VALVVIVVIL
FLQTWRASII PLLAVPVSVV GTFAVLHLLG VSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIEAGLTPR EATYRAMREV SGPIIAIALV LVAVFVPLAF ISGLTGQFYR QFAVTIAIST
VISAINSLTL SPALSALLLK GHHEPKDALT RGMDRAFGGF FRRFNHVFHR GSQAYSGGVR
RVVGRKALML AIYLALVGVT WGLFKAVPGG FVPAQDKQYL IGFAQLPDGA TLDRTDDVIR
RMGEIMKKNP NVEDAIAFPG LSINGFTNSS NAGIVFATLK PFAERTRADQ SGGAVAGQLN
QAFGGIQDAF IAMFPPPPVA GLGTTGGFKL QIEDRASLGY EAMDAAVKAF MAKAYQTPEL
TGLFTSWQVN VPQLYAAIDR TKARQLGVPV TDIFDTLQIY LGSLYANDFN QFGRTYSVRV
QADAAFRARA EDVALLKVRS TTGEMVPLSA LMRIEPSFGP ERAMRYNGFL SADVNGGPAP
GYSSGQARAA VERIAAETLP QGISFEWTEL TYQEILAGNS AVLVFPIAIL LVFLVLAAQY
ESLTLPIAII LIVPMGLLAA MTGVWLSGGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFSGRTPVQA AIEASRLRLR PILMTSLAFV MGVLPLVLST GAGSEMRSAM GVAVFAGMIG
VTAFGLFLTP VFYVALRRMA GNRPLQQHGS HTAPLIEETG AGGAARPLPA APRGQHE
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