Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_0661 |
Symbol | |
ID | 7384166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | + |
Start bp | 683837 |
End bp | 684925 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643653972 |
Product | porin Gram-negative type |
Protein accession | YP_002552141 |
Protein GI | 222109877 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0957089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT CCCTGATTGC ACTGGCAGTG CTGGCTGCTT CCGGCGCCGC AATGGCCCAA TCCTCCGTGA CGCTGTTCGG TGTTGTTGAC ACCGCTTTCG GCTACGTGGA CAACGCTAAC GCCGCTGGCG ACAGCGTGTA TGGCCTGAGC ACCAGCGGCA ACGCAACGAG CCGTCTGGGC TTCCGCGGCG TGGAAGACCT GGGTGGCGGT CTGAAGGCTG GCTTCTGGCT GGAAGGCGAA ATCTTCGGTG ACAACGGCAA CGCAGCTGGC TTCAACTTCC AGCGCCGTTC CACGGTCAGC CTGGCTGGTG GTTTCGGTGA AGTGCGCCTG GGCCGTGACT ATACCCCTGG CTACACCAAG TTCATCTCGT ACGACGTCTT CGGCCAGGTT GGCATTGGCC AATTCATGGG CTGGAGCAAC TGGAATGGCA ACAACCAAAC CACGGCTAAC AACAACAACG ATGCCAACGG CATCCGTTCG AGCAACCTGA TCAGCTACTT CACCCCTAAC TTCAGCGGCT TCACTGCCGG TCTTGGTTAT GGCTTCGACG AAAAGGCTGA CAAGACGAAC TCGAAGAAGG GTCGTTACGT TGGTGGTTAT GTTGCCTATG ACAACGGCCC TTTGAGTGTT GCCCTGTCTT ATGACGAGAG CAGCGCCCTG ACCCTGGGCT CCGGTGCTAC TGCCGTCAAT GGTGCTGACC GCAATCGTCT GACCTTGGGC GGTTCGTACA ACCTGAACGT TGTCAAGCTG AACGCCATCC TGCAGCAGAC CAAGGATGAT GTCCCTGGCG GTTCCGAGCG CAAGGTTAAC GCCTACATGT TGGGCGCATC CGCTCCTGTG GGCGCTGGCG AAGTCAAGGC CCAGTACGCT CTGTACGACC AGAAGTTCAT CGACTCCAAG GCTCACCAGA TCAGCCTGGG TTATGTCCAC AACCTGTCCA AGCGTACGGC TCTGTACGGC ACCGTGGCTT ACCTGAAGAA CAAGGACGCT TCCAACCTGG GTCTGAATGC CAAGAACCTG AGCACCGGCG GCCCCGGCGC TGGCGAGAAC CAGACTGGCG TGCAACTGGG TATTCGCCAC TCCTTCTAA
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Protein sequence | MKKSLIALAV LAASGAAMAQ SSVTLFGVVD TAFGYVDNAN AAGDSVYGLS TSGNATSRLG FRGVEDLGGG LKAGFWLEGE IFGDNGNAAG FNFQRRSTVS LAGGFGEVRL GRDYTPGYTK FISYDVFGQV GIGQFMGWSN WNGNNQTTAN NNNDANGIRS SNLISYFTPN FSGFTAGLGY GFDEKADKTN SKKGRYVGGY VAYDNGPLSV ALSYDESSAL TLGSGATAVN GADRNRLTLG GSYNLNVVKL NAILQQTKDD VPGGSERKVN AYMLGASAPV GAGEVKAQYA LYDQKFIDSK AHQISLGYVH NLSKRTALYG TVAYLKNKDA SNLGLNAKNL STGGPGAGEN QTGVQLGIRH SF
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