Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_0651 |
Symbol | |
ID | 7384156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | - |
Start bp | 676254 |
End bp | 676931 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643653962 |
Product | hypothetical protein |
Protein accession | YP_002552131 |
Protein GI | 222109867 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00814892 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAGCAG CGCGCGGCTT CACGCTGGTG GAGCTGCTCG TGGCCATCGC GGTAATGGCG CTGCTCGCCA TCGCCAGCTG GCGCGGGCTG GACGGCATGG CGCGTTCGCA GCAGCTCACG CGCGAGCGCA CCGACGAGCT GTTGGTGCTG CAAACCGTGC TGGCCCAATG GGCGGCCGAC CTGGATGCCC TGCAGGCCAT CGACCATACC GAACCCATCG CCTGGGACGG CCAGGTGCTG CGCCTTACGC GGCGCGGCAC GCGCCAGCCC GACGAGGGTG CGCTGGTCGT CGCCTGGGCG CGGCGCAGCG TGGACGGCAC CGCCCGCTGG CTGCGCTGGC AGTCCCCCCC GGTGCGCACC CGCGCGGAAT GGAATGCCGC CTGGCAGCGC GCAGCCCAGT GGGCGCGCAC ACCCGGCGAG GCCGAGCGCC GACAGGAAAC CGTGCTGATG CCGCTGGCCA ATTGGCAGCT GTACTACTAC CGCAGCGGCG CCTGGGCCAA TGCGCTGTCC ACCGATACCA GCGCCAGCGC ACCGCGCACG GTCGGCGGGC TGAGCAGCGC CGCCGCCAGC ATCCCCGAGG GGGTGCGCCT GCAACTCACG CTGCCGCCGG GTGGCGCACT CTCGGGCGTG GTCACGCGGG ACTGGGCCAA TCCGCTGCTG GGTGGAGGCA AGTCGTGA
|
Protein sequence | MQAARGFTLV ELLVAIAVMA LLAIASWRGL DGMARSQQLT RERTDELLVL QTVLAQWAAD LDALQAIDHT EPIAWDGQVL RLTRRGTRQP DEGALVVAWA RRSVDGTARW LRWQSPPVRT RAEWNAAWQR AAQWARTPGE AERRQETVLM PLANWQLYYY RSGAWANALS TDTSASAPRT VGGLSSAAAS IPEGVRLQLT LPPGGALSGV VTRDWANPLL GGGKS
|
| |