Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtpsy_0486 |
Symbol | |
ID | 7382777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax ebreus TPSY |
Kingdom | Bacteria |
Replicon accession | NC_011992 |
Strand | - |
Start bp | 501178 |
End bp | 503268 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643653799 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002551968 |
Protein GI | 222109704 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.885927 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTCCC CTCGCCCCCC TGCCTCCCCC CCCCTGCCCG ACCTGGGCCC CCGCGCCAGT GATGCGCTGC TGCGGCTCAT CGCCGACTCG GTGCCCGTCA TGCTGGCCTA TTACGAATCG ACCAGCCTGC GCTGCGTGTT CGCCAACCAG CGCTATGCCG CCTTCAGCGG GCAAACGGTG CAGAGCATCA TCGGCAAGAC GGTGCGCGAG GCGATCGGCG AAAAGGCCTG GCAGGAGATC CTGCCCTACG TGCAGCGCGC GCTGGCTGGG GAGAGCGTTC AGTACACCCG CGAATACGCC GGCCCGCAGG GGCGCGCGCA TATGCTGGAG ATCAGCCTGC AGCCGCACTT CGGGGTGCGC GAAGGACGCA ACGCGATGGT GGGTGCATTC GTGCTCATCA ACGACATCAC CCACCACTGG GAGGCCGAGC GCGCCGTGCG CCAGAGCGAG GAGCGCATGC GCAAGTTCGC CATCGCTACC GAGGAGGGAC TTGCCTTTCA CCGCGACGGG CGCATTCTGG ATGCCAACGA AGCGCTGCAG CGTATGGTCG GCTATTCGCT GGCCGAGCTC GTAGGCCAGT CCATCTTCGA TTTCGCGCTG CCCGAGTACC GGGCGCTGGC CGTGGAATAC ACGCGCCGCG GCAGCGAGAA GCCCTACGAG CTCGCCATGC GCCACAAGGA CGGCCGCGTG ATCCCGATCG AGGTGGTGGG CAAGACCATG CCCCAGCAGG AGGGTGACTA CCGCGTGGTG GTGGTGCGCG ACATCACGGC GCGCAAGCAG GCGCAGGAGC AGGCGCGCTT CCTGGTGCTG CATGACACGC TGACCCAACT GCCCAACCGG CGCCACCTCA TGATGCAGCT GGCACGCATG GCGAGTGCCG CGCAGGAGCG GCAGACCCGC GCCGCCGTGC TGTTCATCGA CCTGGACCAC TTCAAGACGG TCAACGAGTC GCTGGGAAAC CAGGCCGGCG ACCAGCTGCT GATCGAGATT GCGCGGCGCC TGCAGGACGG GGTGAAGGCC ACCGACTTCG TCGCGCGCGT GGGCGGCGAT CAATTCATCG TGCTGCTGCC CGACCTGGCC AACCGCGCCG CAGCGGCCGA AGTAGCCGAT GCGCTGCTGG CGCGCGTGCG CGCCGAGTTC GCCATCGGGG GCACGCCGCT GTCGCTGTCA CCCTCCATCG GCATCAGCGT CTTTCCGGAC GACGGCTACA GCCCCGACGA GCTGCTGCGG CGCGCCGACG CGGCCATGCA CCACACCAAG GAAAGCGGGC GGGGCACGCG CATGTTCTAT GAACCGGGCA TGGAAGGCCA ACCCACGGAG CTGCTGCAGC AAGAGCACCT GCTGCGCGAG GCTGTGTTCC AAGGGGCCTT CGCACTGCAC TACCAGCCCC AGGTGCGGGT GGCCGACGGC CGGCTGGTGG GCTTTGAGGC GCTGGTGCGT TGGCGACACC CGGTGCGCGG CCTCGTGGGG CCGGATGAGT TCATTCCGCT CGCCGAGTCG CGCGGTCTCA TCACGCCCAT TGGCCGCTGG GTGCTGCACG AAGCCTGTCG CCAGCTCAAG GCATGGCACG ACGAAGGGCT GCCCCGGGTG CCGGTGGCGG TGAACCTCTC TGCCATCGAG TTCCGCCAGC GCGACGTGGT GGGCGAGATC GCCCAGGTGC TGCAGTCCGC GGGGCTCGCA CCGCAGTACC TGGAGGTGGA GATCACCGAA TCCGCCCTCA TGCAGCAGGC CGACCACACG CGCACCACCC TGCAGGCCCT GCAGGCCCTG GGCGTTGCCG TAACGGTGGA CGACTTCGGC ACGGGCTACT CGTCGCTGGC CTACCTCAAA CGCTACCCGC TGGACAAGAT CAAGGTGGAC CGCTCCTTCG TCACCGACAC GCCTGCCGAC AGCGAAGACG TGGCCATCGT CACCGCCATC ATCCAGCTCG CGCACAGCCT GCAGCTGCAG CCCGTGGCCG AAGGCGTGGA GACCGCGGAG CAGCTCGCGC TGCTGCGGCG CCTGGGCTGC GAACTGGCGC AGGGCTTTGG CATCGCACCG CCCATGGATG CGCAGCGCGC CCGCGAGTGG CTGCGCGCCC AGGCCGAGTG A
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Protein sequence | MPSPRPPASP PLPDLGPRAS DALLRLIADS VPVMLAYYES TSLRCVFANQ RYAAFSGQTV QSIIGKTVRE AIGEKAWQEI LPYVQRALAG ESVQYTREYA GPQGRAHMLE ISLQPHFGVR EGRNAMVGAF VLINDITHHW EAERAVRQSE ERMRKFAIAT EEGLAFHRDG RILDANEALQ RMVGYSLAEL VGQSIFDFAL PEYRALAVEY TRRGSEKPYE LAMRHKDGRV IPIEVVGKTM PQQEGDYRVV VVRDITARKQ AQEQARFLVL HDTLTQLPNR RHLMMQLARM ASAAQERQTR AAVLFIDLDH FKTVNESLGN QAGDQLLIEI ARRLQDGVKA TDFVARVGGD QFIVLLPDLA NRAAAAEVAD ALLARVRAEF AIGGTPLSLS PSIGISVFPD DGYSPDELLR RADAAMHHTK ESGRGTRMFY EPGMEGQPTE LLQQEHLLRE AVFQGAFALH YQPQVRVADG RLVGFEALVR WRHPVRGLVG PDEFIPLAES RGLITPIGRW VLHEACRQLK AWHDEGLPRV PVAVNLSAIE FRQRDVVGEI AQVLQSAGLA PQYLEVEITE SALMQQADHT RTTLQALQAL GVAVTVDDFG TGYSSLAYLK RYPLDKIKVD RSFVTDTPAD SEDVAIVTAI IQLAHSLQLQ PVAEGVETAE QLALLRRLGC ELAQGFGIAP PMDAQRAREW LRAQAE
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