Gene Dtpsy_0397 details

Gene Information

• Locus tag: Dtpsy_0397
• Symbol: rpsD
• ID: 7385405
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax ebreus TPSY
• Kingdom: Bacteria
• Replicon accession: NC_011992
• Strand: +
• Start bp: 402752
• End bp: 403375
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643653711
• Product: 30S ribosomal protein S4
• Protein accession: YP_002551881
• Protein GI: 222109617
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCACGTT ATCTCGGCCC TAAGGCCAAA CTCTCCCGCC GCGAAGGCAC CGACCTGTTC 
CTGAAGAGCG CACGCCGCTC TATCGCGGAC AAGGCCAAGT TTGATTCGAA GCCAGGCCAG 
CATGGCCGTA CTTCTGGCGC ACGCACGTCA GACTATGGTC TGCAACTGCG CGAAAAGCAG 
AAAGTCAAGC GCATGTATGG CGTGCTGGAA AAGCAATTCC GCCGCTATTT CGAGGCCGCT 
GAACGCCTCA AGGGCAATAC GGGCGCTAAT TTGCTCGGCC TGCTCGAGTG CCGCCTGGAT 
AACGTGGTGT ACCGCATGGG CTTCGGCTCG ACCCGTGCCG AAGCGCGTCA GCTCGTGTCC 
CACAAGGCCA TCACTGTGAA TGGTCAAAGC GTCAACATCG CATCCTATCT GGTCAAGGCC 
GGCGACGTGG TTGCGGTACG CGAAAAATCC AAGAAGCAGG CACGTATTGT TGAAGCCTTG 
CAATTGGCGC AGCAGGTGGG CATGCCCGTT TGGGTCGAAG TGAATGCCGA CAAGGTAGAA 
GGTACCTTCA AGAAGGTCCC GGATCGCGAT GAGTTCGGTG CAGACATCAA CGAATCCTTG 
ATCGTTGAGT TGTACTCGCG TTAA 

 

Protein sequence

MARYLGPKAK LSRREGTDLF LKSARRSIAD KAKFDSKPGQ HGRTSGARTS DYGLQLREKQ 
KVKRMYGVLE KQFRRYFEAA ERLKGNTGAN LLGLLECRLD NVVYRMGFGS TRAEARQLVS 
HKAITVNGQS VNIASYLVKA GDVVAVREKS KKQARIVEAL QLAQQVGMPV WVEVNADKVE 
GTFKKVPDRD EFGADINESL IVELYSR