Gene Dtpsy_0337 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtpsy_0337 
Symbol 
ID7385345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax ebreus TPSY 
KingdomBacteria 
Replicon accessionNC_011992 
Strand
Start bp346044 
End bp347621 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content68% 
IMG OID643653651 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_002551821 
Protein GI222109557 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.411531 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCCG GCCTGTCGCT GCGCGTCTCG CAGCACCTGG CGCTCACACC GCAGTTGCAG 
CAGTCGATCC GCCTGCTGCA GCTGTCCACG CTGGAGCTGG CCCAGGAGGT CGAGCAAATG
CTCGACGAGA ACCCCTTCCT GGAGCGCACG CTGGAAGAGG CCCCGCGCGA GGAGTTCGGC
CTGGCCCAGG CCGATGCACC GGTGAGCGAG CAAGACCGCG AAGCCGAAGA TGCTATTTAT
TCAGGAGCTG TCAGCGCAGG ACAGGAAAGC GCTACAAGCC AAAATGATGC AGAAACCTCC
TCCGCCGAAT CCACGGCCGA ACCCGCGGAC TGGGAAGGCG ACGGCTCGGT AGACCTGGCG
CCCGACGACA GCGAGTGGGG CGGCGACGCC CCGGCACGCA ACGGTGCCGG CGCGGGGAGC
GACGACGAGG TGGACGCCAC CGAGCTGGCC CGCAGCCAGG AGTCGCTCAC GGCCTTCCTG
CACCGCCAGG CGCTGGCGCT GCGCCTGTCC GAGCTGGACA TGGCCGCGCT GCGCTTCCTC
ATCGAATCGC TGAACGACGA CGGCTACCTG GACGAGTCGC TGCAGGACCT GGCCGCCAGC
CTGGCGGGCA CCGAAGACCC CGAGCAACTC GATGAACTGG TGCACCGTTT CACCGTGGCG
CTGCGCCTGC TGCAAAGCCT GGAACCCGCG GGCGTGGGCG CGCGCGGCCT GGCCGAATGC
CTCACGCTGC AGCTGCGCGC GATGGACCAG GACGAAGAGG GCGACCCCGA CGTGATCCAG
GCCGCGCTGG CCATCTGCGG CCAGCCACTG GACCTGCTGG CCAAGCGCGA CGTGCGCCGC
CTGGCGCAGG CCTGCGGCAC CAGCGAAGAG CGCACGCGCG CCGCGATGGC CTTGATCGCG
CGGCTGGAGC CACGCCCGGG CAGGCGCTTT GCCGACGTGG ACCGCAACAT CATCGTGCCC
GACGTGATCG TCAAGAAAAC CGGCCGCGGC GGACAGCAGA ACTTCAGCGT GCAGCTCAAC
CCGGACGTGA TGCCGCGTCT GCGTGTGCAC GACATCTACG CCGGCGCGTT GCGCGGCGGC
CGTGGCGAAG GCCACCAGGC GCTGCAGGCA CGGCTGCAGG AGGCGCGCTG GTTCATCAAG
AACATCCAGC AGCGTTTTGA CACCATCCTG CGCGTGTCGC GCGCCATCGT GGAGCGGCAG
AAGAACTTCT TCGTGCATGG CGAACTGGCC ATGCGCCCGC TGGTGCTGCG CGACATTGCC
GATGAACTGG GCCTGCACGA GTCCACCATC AGCCGCGTGA CCACCGCCAA GTACATGGCC
ACGCCGCAAG GCACCTACGA ACTCAAGTAT TTCTTCGGCT CGGGGCTGGG CACCGAAACC
GGCGGCAACG CCTCCAGCAC GGCCGTGCGC GCGCTCATCA AGCAGTTCAT CGCGGCCGAG
AACCCGCACA AGCCGCTGTC GGACAGCCAG ATCGCCGAGA TGCTCAAGGA GCAGGGCATT
GAATGTGCGC GCCGCACCGT GGCCAAATAC CGTGAGGCGC TCAAGATCGC CCCGGCCAAC
CTCCGCAAGG CACTTTGA
 
Protein sequence
MKPGLSLRVS QHLALTPQLQ QSIRLLQLST LELAQEVEQM LDENPFLERT LEEAPREEFG 
LAQADAPVSE QDREAEDAIY SGAVSAGQES ATSQNDAETS SAESTAEPAD WEGDGSVDLA
PDDSEWGGDA PARNGAGAGS DDEVDATELA RSQESLTAFL HRQALALRLS ELDMAALRFL
IESLNDDGYL DESLQDLAAS LAGTEDPEQL DELVHRFTVA LRLLQSLEPA GVGARGLAEC
LTLQLRAMDQ DEEGDPDVIQ AALAICGQPL DLLAKRDVRR LAQACGTSEE RTRAAMALIA
RLEPRPGRRF ADVDRNIIVP DVIVKKTGRG GQQNFSVQLN PDVMPRLRVH DIYAGALRGG
RGEGHQALQA RLQEARWFIK NIQQRFDTIL RVSRAIVERQ KNFFVHGELA MRPLVLRDIA
DELGLHESTI SRVTTAKYMA TPQGTYELKY FFGSGLGTET GGNASSTAVR ALIKQFIAAE
NPHKPLSDSQ IAEMLKEQGI ECARRTVAKY REALKIAPAN LRKAL