| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9647 |
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| Symbol | trbI |
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| ID | 7381864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011991 |
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| Strand | - |
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| Start bp | 118069 |
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| End bp | 119406 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643653307 |
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| Product | conjugal transfer protein TrbI |
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| Protein accession | YP_002551478 |
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| Protein GI | 222109213 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000862164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCAA TCGATCTTGG ATCAGCTGAG GAGGATGATG AGCGGCCAAA AATCCGTCGG
CTGAATCGCC TTCCGATCTT CTTCTTTATT GCACTGATCG TCATCCTCGT GGTCGTCGTG
ATCTGGGGCA TGGCGCAACG CGGCCTGATC GGAAATCGTG GTGCCCAGCC GGAGCAATCG
GTCGGCCAAC CGGCGTCCGA TTTTGCCGAC GAGCTGAAGC GCAATATCGG TGACGGCGTC
AACGAGCCTC AAAGGCAAGA TCCGCTAATT ATCACGCCCG GCGAGACACC GATGGAACTT
CCGGAAGGCG TGAACCCATT CCAGCCGGGG TCGCGCCAAC GGCCGACGAC GCAGCAAGCG
GAAACGCCCC TCGAGCCGGA AGCGGATTGG CGTGAACGCC TAAAGCGTGA GCATGAAGAG
GCTCTGTTGC GCGAGCAGAA CCGCCAGAGG CTGGCGGCGA TGCAAGCACA GGCGAATGCT
CGCAACAGTC CGATGGCCGT CGACATAGGG AAAGTCACTC AGCAACAGGG CATAGGCCAG
CAAGGGCAGG GGCAGGCGAA CGGCCTGACG AGCCCGAATG GCACGGCGGA CCTTCTTTCC
GCAGCCATGC GTGCGGCTGG CGCGGGGCCA GGCGGGATGG CCGATCCCAA CAACCAGCAA
GGCAAGATCT CGTTTCTGAA CAAGGATATT GCCGATGCGG GCTATCTTCC CAACCAGATC
GTACCGCAGC AATCGCCTTT CGAGCTAAAA CGTGGTTCGG TGATCCCGGC GACATTGATC
ACCGGCATCA ATTCAGACTT ACCGGGGCGG ATCACCGCGC AGGTGCGCCA GCACGTCTAT
GACAGCGCGA CCGGCCACAG GCTTCTGATC CCGCAAGGGA CGAAACTGTT TGGCCGGTAC
GATTCCGAAG TGTCCTATGG TCAGTCACGG GCCTTGGTTG TCTGGACCGA CATCATTTTC
CCAAACGGGT CGACACTTCA AATCGGCGGT ATGGCTGGCG TCGATACCCA AGGGTACGGC
GGGTTCAAGG ACAAGGTGAA GAACCATTTC TGGCGGGTTT GGGGTTCGGC AATCCTGGTC
GCCGCGATCG GAACCGGTGT CGACATGGCT TTGCCAGAGA GCAACAGTAA CGCCTTCGGC
GTCACGCAGA ACGATCCGAC GGATGCGGCC CGCCGCAACT TCGCGGAGAC TTTCGGCCGG
GTTGCTGACA GGACCATCGA CAAGAACATG AATATCCAGC CGACGCTGGA AATTCGGCCG
GGGTACCAGT TCAACATCCT CGTGGATCAG GACATTGTTC TCCCCGGCGC CTATCAAACC
GGATATGTGG AGCGGTAA
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| Protein sequence | MSSIDLGSAE EDDERPKIRR LNRLPIFFFI ALIVILVVVV IWGMAQRGLI GNRGAQPEQS
VGQPASDFAD ELKRNIGDGV NEPQRQDPLI ITPGETPMEL PEGVNPFQPG SRQRPTTQQA
ETPLEPEADW RERLKREHEE ALLREQNRQR LAAMQAQANA RNSPMAVDIG KVTQQQGIGQ
QGQGQANGLT SPNGTADLLS AAMRAAGAGP GGMADPNNQQ GKISFLNKDI ADAGYLPNQI
VPQQSPFELK RGSVIPATLI TGINSDLPGR ITAQVRQHVY DSATGHRLLI PQGTKLFGRY
DSEVSYGQSR ALVVWTDIIF PNGSTLQIGG MAGVDTQGYG GFKDKVKNHF WRVWGSAILV
AAIGTGVDMA LPESNSNAFG VTQNDPTDAA RRNFAETFGR VADRTIDKNM NIQPTLEIRP
GYQFNILVDQ DIVLPGAYQT GYVER
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