Gene Avi_4389 details

Gene Information

• Locus tag: Avi_4389
• Symbol: gidA
• ID: 7387961
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3719776
• End bp: 3721641
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643653031
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_002551202
• Protein GI: 222150245
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCGGC GATTTGATGT GATTGTGATT GGCGGTGGGC ATGCGGGCAG TGAAGCTGCC 
TATGCGAGTG CGCGCCTTGG TGCGCGAACA TGCCTAGTGA CGCATCGACG CGATACGATC 
GGTGTTATGT CTTGCAATCC GGCCATTGGC GGTTTGGGCA AAGGGCACCT TGTCCGGGAA 
ATTGATGCGC TCGGCGGACT CATGGGCAGA TGTGCCGATG CCGCTGGAAT TCAGTTCCGG 
TTGCTTAACC GTAAGAAAGG ACCGGCGGTA CGAGGGCCGA GAACTCAAGC CGACCGAAAA 
CTTTACCGCC AAGCCGTACA AAATGTTCTC TTCAATCATC CGCAGCTCGA GATCATCGAA 
GGGGATGTGT TCGATCTTAA CGTCGAAAAT GGCACGGTTA AAGGGGTTAT TTTGGCAGAC 
GGGCAAAGCC TGCCCAGCGC GTCAGTGATA TTGACCTCCG GTACTTTTTT GCGCGGTCTC 
ATCCATATTG GACAGACAAA AATTCCGGCC GGACGTGTTG GCGAAGCCCC TTCGCTCGGT 
TTGAGCGCGA CATTGGGGCG GTTGGGCCTA AGGCTGGGTC GGTTGAAAAC CGGAACTCCG 
GCCAGGTTGG ATGGTCGAAC TATTGACTGG GCACAGCTCG AAATGCAGGC GGCTGATGAG 
CAACCAGTCC CGTTCTCGTT CATGACCGAT CGGATTACCA ATCGTCAGAT CGAATGTGGA 
ATCACTCGAA CCACTGCCGC AACCCACACA ATCATTCGAG ATAATATTCA TCTCTCTGCC 
ATGTATTCTG GGCAGATCGA AGGTGTCGGC CCACGCTACT GTCCTTCGAT TGAGGATAAG 
ATCAGCCGGT TTGGAGATAG GGATGGCCAT CAGGTTTTTC TTGAGCCTGA GGGTCTGGAT 
GACCATACGG TTTATCCGAA TGGAATATCG ACGTCTTTGC CGGAGTCCGT GCAGAAAGAG 
TTCATGAGAA CACTGCCTGG CTTGGAAAAT GTGACTATTC TCCAGAGCGC TTATGCAATC 
GAATATGACC ACATAGACCC GCGGGAATTG TCGGCAAGCC TCGAGTTGAA ACGCCTGAGT 
GGTCTTTATC TCGCTGGGCA GATCAATGGA ACCACTGGTT ACGAAGAAGC TGCGGCACAA 
GGCCTGGTGG CAGGATTGAA TGCCGCACGC ACGGCAGGCG GCCAGGACGT GGTTCATTTC 
AGCCGGGCTC AATCGTATAT TGGCGTGATG ATTGATGATT TGATCAGCCA TGGCGTGACT 
GAACCCTATA GGATGTTCAC CTCACGTGCG GAGTTTCGTT TGTCGCTTCG GGCAGATAAT 
GCCGATATGC GTTTGACGCC TATTGGTATC GCGCTCGGAT GTATCGCTTC AGACCAAGAA 
AAACGGTTTA AAGACTACAG GCATCAGATT GATGACACCA TCAATATGCT TGAGACGAGG 
AAACTAACAC CCAATGAAGC CGCTGCCGTT GGCATCCCTG TTAATCAGGA CGGGCGCCGG 
CGCACTGCTC TTGAGCTGTT GGCCTATCCC GATATTTCGA TTGCCGATCT CTCCCGGCTC 
TGGCCTGAAC TTGATGCTTT GGATAGTAAG GTCGCGGAGG CTGTTGAAAT TCACGCGACC 
TATGCTGTTT ATATGGATCG ACAAAATGCC GATATTGCCG CAACCAAACG AGATGAAGAT 
AGACTGATTC CAAAGGATTT CGATTATGCT TCCCTATCGG GCCTATCCAA CGAGCTAAAG 
CAGAAACTGG AAAAGACCCG TCCTGAGAAT CTCTCTCAGG CGGCGAAGGT CGAGGGCATG 
ACCCCCGCGG CCATTTCTCT GCTTATCGCT TTCTTAAACA AGGGTATGTT GCGACATGTC 
GGTTGA 

 

Protein sequence

MPRRFDVIVI GGGHAGSEAA YASARLGART CLVTHRRDTI GVMSCNPAIG GLGKGHLVRE 
IDALGGLMGR CADAAGIQFR LLNRKKGPAV RGPRTQADRK LYRQAVQNVL FNHPQLEIIE 
GDVFDLNVEN GTVKGVILAD GQSLPSASVI LTSGTFLRGL IHIGQTKIPA GRVGEAPSLG 
LSATLGRLGL RLGRLKTGTP ARLDGRTIDW AQLEMQAADE QPVPFSFMTD RITNRQIECG 
ITRTTAATHT IIRDNIHLSA MYSGQIEGVG PRYCPSIEDK ISRFGDRDGH QVFLEPEGLD 
DHTVYPNGIS TSLPESVQKE FMRTLPGLEN VTILQSAYAI EYDHIDPREL SASLELKRLS 
GLYLAGQING TTGYEEAAAQ GLVAGLNAAR TAGGQDVVHF SRAQSYIGVM IDDLISHGVT 
EPYRMFTSRA EFRLSLRADN ADMRLTPIGI ALGCIASDQE KRFKDYRHQI DDTINMLETR 
KLTPNEAAAV GIPVNQDGRR RTALELLAYP DISIADLSRL WPELDALDSK VAEAVEIHAT 
YAVYMDRQNA DIAATKRDED RLIPKDFDYA SLSGLSNELK QKLEKTRPEN LSQAAKVEGM 
TPAAISLLIA FLNKGMLRHV G