Gene Avi_4361 details

Gene Information

• Locus tag: Avi_4361
• Symbol: mtbA
• ID: 7387938
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3676358
• End bp: 3678241
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643653008
• Product: MFS permease
• Protein accession: YP_002551179
• Protein GI: 222150222
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.84184
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAATG CCGCAAGCCT GCACGCCGCG CCGCGCAGCA TGACCAAGGA GGAGCGAAAG 
GTCATCTTCG CCTCTTCGCT CGGCACGGTT TTCGAGTGGT ATGATTTTTA TCTCTACGGT 
TCGCTGGCGA TTTATATCGG CGCGACCTTC TTTTCCCAAT ATCCTGAAAC CACCCGCAAT 
ATTTTCACGC TGCTGGCGTT TGCCGCCGGC TTTCTGGTGC GGCCTTTCGG CGCGCTGGTG 
TTCGGACGGC TGGGCGATCT GGTCGGGCGA AAATATACGT TTCTGGTCAC CATCCTGATC 
ATGGGCGCCT CGACCTTTCT GGTCGGTATT CTACCAGGGT CAGCGACCAT CGGCATCGCT 
GCTCCGATTA TCCTGATCAT ATTGCGCATG TTGCAGGGCC TGGCGCTGGG CGGTGAATAC 
GGCGGCGCTG CGACCTATGT GGCCGAACAT GCGCCGCATG GCCGTCGCGG TTTCTATACG 
TCCTGGATCC AGACCACGGC AACGCTGGGC CTGTTCCTGT CGCTGCTGAT CATTCTCGGT 
ATCCAGACAG CCATGGGCAA GGAAGCCTTT GCTGCCTGGG GCTGGCGTCT TCCTTTCCTT 
TTATCGGTCA TTCTACTGGG GATTTCCGTC TGGATTCGCA TGCAGATGAA CGAATCGCCC 
GCCTTCAAGA AAATGAAGGA AGAGGGCACC CAGTCGAAAG CGCCAATTTC TGAAGCTTTC 
GGCCAGTGGA AGAATGCCAA GATTGCTATT CTTGCCCTGT TCGGTGCTGT CGCAGGCCAG 
GCAGTGGTCT GGTATTGCGG CCAGTTTTAT GCGCTGTTCT TCTTGCAGAA TGTTCTGAAG 
GTCGATCCAC AGGCCGCCAA TATCATGGTG GCCATCGCGC TGGCGTTCGG CACGCTGTTC 
TTCGTGGTCT TCGGCTGGCT TTCCGACAAG ATCGGTCGCA AGCCGATCAT CATGGCGGGG 
CTGCTTCTGG CTATGGTGAC CTATTTCCCG CTGTTCAAGG CGATGACCTG GGCTGGCAAT 
CCGGCTCTGG CACAGGCGCA GGATACGTTG AAGGCAACGG TGACTGCCGA TCCCAAGGAT 
TGTAACTTCC AGTTCAATCC GACCGGCACG GCAAAATTCA CCACCTCTTG CGATATAGCC 
ACGGCGCTTC TGACCAAGAA TTCGGTGCCG TATGAAGTGG TGCCCGGCCC GGCTGGCTCG 
GCTGCGACGG TAAAGCTTGG CGATAGTCAG ATCGAAAGCT ATGACGCCGT CAAGGCTGGC 
GCCAACGCCA AGGCTCTGGA TGCCGCCCTG CAGAAAAAGA TCAATGTCGC CCTGCAACAG 
AATGGTTATC CGCTGGTTCG GGCGCCGGTT CAGGTCCCCG ATAGCAAGCT TGATGGCTTT 
ATCGCCGCCA ATGCGGAACT GGGTCTGAGT GCCGACACTG TCCGTACTGG TGCCAAGACC 
ATGGTGCCCA CGGCAAAGCT CGTCACCGAC AAGTTGCTGA CCCCGGAAGA GGCAACAGCT 
GCCGCTGCGC CTGAAATGGC GGTCTATACC GTTGCCAATG GCGGTGCATT CAGGATGGTG 
GCGGACCCTG CCCAGGTCAA ATGGGTGCCG CTGATTGCCG TGCTGACGGT GCTGGTGATC 
TATGTCACCA TGGTCTACGG GCCGATTGCC GCGATGCTGG TGGAGATGTT CCCGACCCGC 
ATTCGCTACA CGGGCATGTC GCTTCCCTAT CATATCGGCA ATGGCTGGTT CGGCGGCCTG 
CTGCCAGCAA CGGCCTTCGC GATGAGCGCA GCCAAGGGCG ATATCTATTA CGGCCTCTGG 
TATCCGATCA TCATCGCCGG GATGTCCTTC ATCATCGGCA TGATCTTCCT GAAGGAAACC 
AAGAACAACG ATATCGACGG CTGA 

 

Protein sequence

MANAASLHAA PRSMTKEERK VIFASSLGTV FEWYDFYLYG SLAIYIGATF FSQYPETTRN 
IFTLLAFAAG FLVRPFGALV FGRLGDLVGR KYTFLVTILI MGASTFLVGI LPGSATIGIA 
APIILIILRM LQGLALGGEY GGAATYVAEH APHGRRGFYT SWIQTTATLG LFLSLLIILG 
IQTAMGKEAF AAWGWRLPFL LSVILLGISV WIRMQMNESP AFKKMKEEGT QSKAPISEAF 
GQWKNAKIAI LALFGAVAGQ AVVWYCGQFY ALFFLQNVLK VDPQAANIMV AIALAFGTLF 
FVVFGWLSDK IGRKPIIMAG LLLAMVTYFP LFKAMTWAGN PALAQAQDTL KATVTADPKD 
CNFQFNPTGT AKFTTSCDIA TALLTKNSVP YEVVPGPAGS AATVKLGDSQ IESYDAVKAG 
ANAKALDAAL QKKINVALQQ NGYPLVRAPV QVPDSKLDGF IAANAELGLS ADTVRTGAKT 
MVPTAKLVTD KLLTPEEATA AAAPEMAVYT VANGGAFRMV ADPAQVKWVP LIAVLTVLVI 
YVTMVYGPIA AMLVEMFPTR IRYTGMSLPY HIGNGWFGGL LPATAFAMSA AKGDIYYGLW 
YPIIIAGMSF IIGMIFLKET KNNDIDG