Gene Avi_4333 details

Gene Information

• Locus tag: Avi_4333
• Symbol: ompA
• ID: 7386571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3655368
• End bp: 3656033
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643652987
• Product: porin
• Protein accession: YP_002551158
• Protein GI: 222150201
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGAAGA AATTCATCCT TCTTGCCCTG ACTGCTACCT ATCTGAGTGC CTGCACCACC 
ACAGACCCCT ATACGGGCGA ACAGAAAATG TCGAACACCG CCGGTGGCGC GATGATTGGC 
GCGGGCCTGG GCGCGCTCGG CGGCCTGGCG GTCGGCGGCG GCGGCCACGG CAAGCGCAAT 
GCCGCCCTGA TCGGCGCTGG CATCGGTGCG CTGGCAGGCG GCGCCATTGG CAGTTACATG 
GACAATCAGG AAGCCGAACT GCGCGCCCAG CTTCAGGGCA CCGGCGTGTC CGTCACCCGC 
CAAGGCGACC GGATCATCCT CAACATGCCG TCCAACATCA CTTTCCCGAC CGATCAGGAT 
CAGGTGTTGC CGCCGTTCTA TCCAACGCTG AATTCGGTCG CCATCGTGCT GAAAAAGTTC 
AACCGCACCC TGGTCGATGT CAACGGTCAT ACCGACTCGA CCGGCGGCTT GCAGCACAAT 
CAGGATCTGT CGCAGCGCCG CGCCGAATCG GTGCTGAACT ATCTCGGCTC GCAGGGCGTC 
GATCCGCGCC GCATGTCGGC CATGGGCTTT GGCCCCAGCC AGCCGATTGC CACCAACGCC 
ACGCCACAAG GCCGCGCTCA GAACCGTCGC GTCGAAGTGG CGATTTCGCC GCTCAAGGAC 
AATTGA 

 

Protein sequence

MLKKFILLAL TATYLSACTT TDPYTGEQKM SNTAGGAMIG AGLGALGGLA VGGGGHGKRN 
AALIGAGIGA LAGGAIGSYM DNQEAELRAQ LQGTGVSVTR QGDRIILNMP SNITFPTDQD 
QVLPPFYPTL NSVAIVLKKF NRTLVDVNGH TDSTGGLQHN QDLSQRRAES VLNYLGSQGV 
DPRRMSAMGF GPSQPIATNA TPQGRAQNRR VEVAISPLKD N