| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4322 |
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| Symbol | |
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| ID | 7386562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3636859 |
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| End bp | 3640395 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643652978 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_002551149 |
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| Protein GI | 222150192 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGCG CCGTTGAGGG CACCGCCCGC ACATTGATCG AAGCCCTGCG CGCCAAGCAC
AGGGGCAGCG GCGTTGAAGG GCTGGTGCAT GAATATTCGC TGTCCAGCCA GGAAGGCGTG
GCGCTGATGT GCCTGGCCGA AGCGCTGCTG CGCATTCCCG ACCACGCGAC GCGCGATGCG
CTGATCCGCG ACAAGATTGC CGAGGGCGAT TGGAAAGCCC ATCTCGGCGG TGGCCGGTCG
CTGTTCGTCA ATGCCGCCAC CTGGGGACTG GTGGTGACCG GCAAGCTGAC CTCGACCGTC
AATGATCGTG GTCTGTCCGC AGCTCTGACC CGGCTGATTG CCCGGTGTGG CGAGCCGGTC
ATACGCCGGG GCGTCGATAT GGCCATGCGG ATGATGGGGG AGCAATTCGT CACCGGCGAA
ACCATCGAGG AGGCGCTGAA ACGCGCCCGC CCGCTGGAAG TCAGGGGCTT TCGCTATTCC
TACGACATGC TGGGCGAGGC GGCGACCACG GCTGGCGATG CGGCGCGGTA TTTCCGGGAT
TATCAGCAGG CGATCCATGC CATCGGCAGG GCTTCGGCGG GACGCGGCAT TTATGATGGT
CCCGGCATTT CCATCAAGCT GTCGGCCCTG CATCCGCGCT ACAGCCGCAC CAAGGCTGAG
CGGGTGATGG GTGAATTGCT GCCGCAGGTC AAAGCGCTGG CGCTGCTGGC CAAGCACTAT
GATATTGGCC TCAATATCGA TGCCGAAGAG GCCGACCGGC TGGAACTGTC GCTGGATCTG
CTGGAAGACC TCTGCCTCGA TCCGGCTTTG TCGGGCTGGG ATGGCATGGG CTTCGTGGTG
CAGGCCTATG GCAAGCGCTG CCCCTTCGTG TTGGATTTCA TCATTGATCT TGCCCGCCGC
GCCGAGCGCC GGATCATGGT GCGGCTGGTC AAGGGGGCCT ATTGGGATGC CGAGATCAAG
CGGGCGCAGG TCGATGGACT GGCGGATTTT CCTGTCTATA CCCGCAAGGT CCACACCGAC
GTCTCCTATA TCGCTTGCGC CAAAAAGCTG CTGGCGGCGC GGGATGTGAT CTTTCCGCAA
TTTGCCACCC ACAATGCCCA GACGCTGGCG GCAATCTATC ATCTGGCCGG CCCTGATTTC
AAAACCGGCT CCTACGAGTT TCAGTGCCTG CATGGCATGG GCGAACCGCT CTATGACGAA
GTGGTGGGCA AGGCGAAGCT TGGCCGCCCC TGCCGGATCT ACGCGCCTGT GGGTACGCAT
GAGACGCTGC TGGCCTATCT GGTGCGCCGC CTGTTGGAAA ATGGTGCCAA TTCCTCCTTC
GTCAATCGGA TCGCCGATCC GGCCATATCC GTGGATGCGT TGATCGCGGA TCCAACCGAA
ACCGTGCTCG CCATGCCGCA GCCGGGGGCA AAGCATGACA GGATTGCCTT GCCCGCCGAT
CTTTTCGAAG GCCGCAAAAA TTCCGCAGGC CTTGATCTCA GCAATGAAGC GGTGTTGCAG
GCGCTTGGCG AGACCTTGCG CCAAACCGCT CTCTCGTCTT GGGATGCGGT GCCCGCTTTG
ATTGCGGGGA CAAGTGCCGG GCCTGTGCGT TCTGTCGTCA ATCCCGGCGA CCACCGTGAT
GGGGTTGGCA ATATCAGGGA AGCAACCGAG GAAGAGGCGC GTCAGGCCGT GGCCGATGCC
GCGCTTCATG CTCAGATCTG GGCACAGACG GTGCCTTTGG AGCGGGCGCG GATGCTGGAC
GAGGCTGCCG ACCTGATGCA GGCGCGGTTG CCGGTATTGC TGGGGCTGAT CATGCGCGAG
GCGGGCAAAT CGGCGGCCAA TGCCATTGCC GAAGTGCGCG AGGCCATCGA CTTTCTGCGC
TATTACGCCG AGCAGGCGCG TCGCACCCTG GGGCCGGTAC ATGCGCCACT GGGGCCAATT
GTGTGTATCA GCCCCTGGAA TTTTCCATTG GCGATTTTCA CCGGACAGGT GGCGGCAGCA
CTGGTGGCAG GCAATCCGGT TCTGGCCAAG CCCGCCGAGG AAACACCGCT GATCGCCGCT
GAGGCCGTGC GCCTCCTGCA TCAGGCAGGT GTCCCCGGTG CTGCCCTCCA GCTTCTGCCC
GGTGACGGGC GGATCGGGGC GGCATTGGTC GCCTCGCCGC AGGTGGCAGG CGTGATGTTT
ACCGGCTCGA CCGAGGTTGC CAAGCTGATC CAGAGGGAGC TTGCCGCGCG TCTGCTGGCC
AATGGCAGGC CGATCCCGCT GATTGCCGAG ACCGGTGGCC AAAATGCGAT GATTGTCGAT
TCCTCGGCGC TTGCCGAACA GGTGGTGGCG GATGTGATTG CCTCGGCCTT CGACAGCGCC
GGTCAGCGTT GTTCAGCGCT GCGGGTTCTG TGCCTTCAGG AGGAGGTGGC GGATCGCATT
CTTGCCATGC TGAAAGGCGC GCTGCGTGAA CTGACCTTGG GCCGCACCGA CCGGCTGTCT
ACCGATATCG GCCCGGTGAT TACCGCCGAG GCCAAGGGCG TGATCGAGGC ACATATTGCT
GCCATGCGCG CCAGGGGCAA GGCGGTGGAG CAGATCGGTG CGGGCGAGGG GACGGAGCAC
GGCACCTTCG TTGCGCCGAC CATCATCGAG ATCGGCGCAT TGTCTGATCT TAAGCGGGAA
GTATTTGGCC CGGTCCTGCA TGTGCTGCGC TACCGGCGCA ACGATCTCGA CCGCCTGATC
GACCAGATCA ACGCCACCGG CTATGGCCTG ACCTTCGGCC TGCATACACG GCTGGATGAG
ACCATTGCCC ATGTAACTTC AAGGGTGAAG GCAGGCAATC TCTACATCAA CCGCAATGTG
ATTGGCGCGG TGGTCGGCGT GCAGCCGTTC GGTGGCCGTG GCCTGTCCGG CACCGGGCCG
AAGGCTGGCG GCCCGCTCTA TCTGGGCCGC CTGGTTGAAA AGCCGCCGGT GCCGCCGCAG
CATAGTTCGG TTCATGTTGA TCCGGGCCTG CTGGATTTTG CCAAATGGCT TGACGAGCAG
GGTGAAGCGG CAGCGGCGGA AGCAGCACGC AGCCTCGGCA GCCTTTCGGC GGTCGGTTTG
GTTCAGGATC TGCCTGGGCC AGTCGGCGAG CGCAATCTGT ATGCCCTGCA TCCGCGTGGC
ACCATTCTGC TGCTGTCCCG CACCAGGCAG GGGCTTTACC GGCAAGTGGC CAGCGCGCTG
GCGACGGGCA ATAGCATGGT CATCGACACA AGCACCGATC TCCACGAAGC GCTGGCGGGC
CTGCCGGATG GTGTGCTTGC CCGTGTCCAT TTCGTCCAAG CGTCAGGCTG GGCTGAGGCC
GGTCCTTTCG CAGGCGCATT GCTGGAAGGC GAGGGGGAGC AGATTATCGA GCAGGCAAGA
GCCATTGCCG CCCTGTCCGG TCCACTGGTC CTGACCCAGG TGGCTTCCAG TGATAAGCTG
GCTAAGAAAA TTGGTGTTGA TGATGCCTAC TGCCTGAACT GGCTGGTCGA GGAGGTTTCG
GTGTCCACCA ATACGGCGGC TGCCGGAGGC AATGCCAGCC TGATGGCAAT CGGCTGA
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| Protein sequence | MRRAVEGTAR TLIEALRAKH RGSGVEGLVH EYSLSSQEGV ALMCLAEALL RIPDHATRDA
LIRDKIAEGD WKAHLGGGRS LFVNAATWGL VVTGKLTSTV NDRGLSAALT RLIARCGEPV
IRRGVDMAMR MMGEQFVTGE TIEEALKRAR PLEVRGFRYS YDMLGEAATT AGDAARYFRD
YQQAIHAIGR ASAGRGIYDG PGISIKLSAL HPRYSRTKAE RVMGELLPQV KALALLAKHY
DIGLNIDAEE ADRLELSLDL LEDLCLDPAL SGWDGMGFVV QAYGKRCPFV LDFIIDLARR
AERRIMVRLV KGAYWDAEIK RAQVDGLADF PVYTRKVHTD VSYIACAKKL LAARDVIFPQ
FATHNAQTLA AIYHLAGPDF KTGSYEFQCL HGMGEPLYDE VVGKAKLGRP CRIYAPVGTH
ETLLAYLVRR LLENGANSSF VNRIADPAIS VDALIADPTE TVLAMPQPGA KHDRIALPAD
LFEGRKNSAG LDLSNEAVLQ ALGETLRQTA LSSWDAVPAL IAGTSAGPVR SVVNPGDHRD
GVGNIREATE EEARQAVADA ALHAQIWAQT VPLERARMLD EAADLMQARL PVLLGLIMRE
AGKSAANAIA EVREAIDFLR YYAEQARRTL GPVHAPLGPI VCISPWNFPL AIFTGQVAAA
LVAGNPVLAK PAEETPLIAA EAVRLLHQAG VPGAALQLLP GDGRIGAALV ASPQVAGVMF
TGSTEVAKLI QRELAARLLA NGRPIPLIAE TGGQNAMIVD SSALAEQVVA DVIASAFDSA
GQRCSALRVL CLQEEVADRI LAMLKGALRE LTLGRTDRLS TDIGPVITAE AKGVIEAHIA
AMRARGKAVE QIGAGEGTEH GTFVAPTIIE IGALSDLKRE VFGPVLHVLR YRRNDLDRLI
DQINATGYGL TFGLHTRLDE TIAHVTSRVK AGNLYINRNV IGAVVGVQPF GGRGLSGTGP
KAGGPLYLGR LVEKPPVPPQ HSSVHVDPGL LDFAKWLDEQ GEAAAAEAAR SLGSLSAVGL
VQDLPGPVGE RNLYALHPRG TILLLSRTRQ GLYRQVASAL ATGNSMVIDT STDLHEALAG
LPDGVLARVH FVQASGWAEA GPFAGALLEG EGEQIIEQAR AIAALSGPLV LTQVASSDKL
AKKIGVDDAY CLNWLVEEVS VSTNTAAAGG NASLMAIG
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